TNFAIP2 (TNF alpha induced protein 2) - Rat Genome Database

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Gene: TNFAIP2 (TNF alpha induced protein 2) Sus scrofa
Analyze
Symbol: TNFAIP2
Name: TNF alpha induced protein 2
RGD ID: 14253141
Description: ENCODES a protein that exhibits SNARE binding (inferred); INVOLVED IN exocyst localization (inferred); exocytosis (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis (ortholog); genetic disease (ortholog); FOUND IN exocyst (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor alpha-induced protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFAIP2
(Sus scrofa - pig)		 No map positions available.
TNFAIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,121,469 - 103,137,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,121,476 - 103,137,439 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,589,798 - 103,603,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,662,417 - 102,673,529 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414102,662,416 - 102,673,529NCBI
Celera1483,646,666 - 83,657,739 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,771,095 - 83,782,134 (+)NCBIHuRef
CHM1_114103,530,048 - 103,541,100 (+)NCBICHM1_1
T2T-CHM13v2.01497,357,363 - 97,373,355 (+)NCBIT2T-CHM13v2.0
Tnfaip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,408,898 - 111,421,452 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,408,903 - 111,421,452 (+)EnsemblGRCm39 Ensembl
GRCm3812111,442,450 - 111,455,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,442,469 - 111,455,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,680,872 - 112,693,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,892,770 - 111,902,825 (+)NCBIMGSCv36mm8
Celera12112,632,641 - 112,645,211 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.99NCBI
Tnfaip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,297,388 - 136,311,106 (+)NCBIGRCr8
mRatBN7.26130,476,832 - 130,489,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,476,889 - 130,489,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,646,992 - 130,660,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,942,980 - 130,956,005 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,306,961 - 130,319,987 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,890,869 - 135,903,647 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,890,931 - 135,903,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,512,073 - 144,524,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,196,746 - 136,210,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6128,033,680 - 128,046,938 (+)NCBICelera
Cytogenetic Map6q32NCBI
Tnfaip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,160,483 - 2,171,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,159,773 - 2,173,312 (+)NCBIChiLan1.0ChiLan1.0
TNFAIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,276,390 - 104,292,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,492,791 - 103,508,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,745,176 - 83,759,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,562,408 - 103,572,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,561,181 - 103,570,309 (+)Ensemblpanpan1.1panPan2
TNFAIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,965,776 - 70,977,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,967,741 - 70,976,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,476,799 - 70,489,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,241,603 - 71,254,791 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,244,886 - 71,253,380 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,904,950 - 70,918,118 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,969,797 - 70,982,976 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,369,924 - 71,383,105 (+)NCBIUU_Cfam_GSD_1.0
Tnfaip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,063,073 - 3,074,796 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366211,891,326 - 1,903,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFAIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,099,232 - 81,113,399 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,102,127 - 81,113,509 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,309,309 - 68,323,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfaip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,563,176 - 1,572,848 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,563,274 - 1,575,884 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 5 2 20 2 3 2
Below cutoff 2

Sequence


Protein Sequences
Protein RefSeqs XP_020937187 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000074521
  ENSSSCP00000074521.2
  ENSSSCP00070018753.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036612 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070011642 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000072620 ENTREZGENE
  ENSSSCT00000072620.2 UniProtKB/TrEMBL
  ENSSSCT00070022667.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.50 UniProtKB/TrEMBL
  1.10.357.70 UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/TrEMBL
NCBI Gene TNFAIP2 ENTREZGENE
PANTHER PTHR21292 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 2 UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
UniProt A0A4X1TTY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RNN3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94251 ENTREZGENE