CCDC22 (coiled-coil domain containing 22) - Rat Genome Database

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Gene: CCDC22 (coiled-coil domain containing 22) Sus scrofa
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Symbol: CCDC22
Name: coiled-coil domain containing 22
RGD ID: 14252866
Description: ENCODES a protein that exhibits cullin family protein binding (inferred); INVOLVED IN cellular copper ion homeostasis (inferred); cytoplasmic sequestering of NF-kappaB (inferred); endocytic recycling (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 22
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,285,246 - 43,307,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,285,232 - 43,303,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,133,195 - 48,151,807 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CCDC22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,285,246 - 43,307,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,285,232 - 43,303,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,133,195 - 48,151,807 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,235,470 - 49,250,520 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX49,235,470 - 49,250,520 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,091,930 - 49,106,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,978,885 - 48,994,341 (+)NCBINCBI36hg18NCBI36
Build 34X48,848,381 - 48,863,351NCBI
CeleraX52,557,382 - 52,572,443 (-)NCBI
Cytogenetic MapXp11.23NCBI
HuRefX46,748,323 - 46,763,422 (+)NCBIHuRef
CHM1_1X49,124,228 - 49,139,289 (+)NCBICHM1_1
Ccdc22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,460,048 - 7,471,659 (-)NCBIGRCm39mm39
GRCm39 EnsemblX7,460,048 - 7,471,756 (-)Ensembl
GRCm38X7,593,809 - 7,605,420 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,593,809 - 7,605,517 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,170,935 - 7,182,546 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X6,750,770 - 6,762,351 (-)NCBImm8
CeleraX3,866,265 - 3,877,962 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.42NCBI
Ccdc22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X14,898,296 - 14,910,244 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX14,898,296 - 14,910,244 (+)Ensembl
Rnor_6.0X15,742,978 - 15,754,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,742,978 - 15,754,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,534,513 - 16,546,460 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,939,045 - 26,951,756 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX14,981,697 - 14,993,611 (+)NCBICelera
Cytogenetic MapXq12NCBI
Ccdc22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543718,996 - 733,753 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543719,185 - 731,788 (+)NCBIChiLan1.0ChiLan1.0
CCDC22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X49,387,980 - 49,402,742 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,387,980 - 49,402,742 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X41,535,439 - 41,550,547 (+)NCBIMhudiblu_PPA_v0panPan3
CCDC22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,329,320 - 42,343,270 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,328,755 - 42,343,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,708,063 - 16,721,934 (+)NCBI
ROS_Cfam_1.0X42,471,025 - 42,484,896 (+)NCBI
ROS_Cfam_1.0 EnsemblX42,470,447 - 42,484,887 (+)Ensembl
UMICH_Zoey_3.1X42,454,985 - 42,468,855 (+)NCBI
UNSW_CanFamBas_1.0X42,442,443 - 42,456,314 (+)NCBI
UU_Cfam_GSD_1.0X42,537,397 - 42,551,268 (+)NCBI
Ccdc22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,867,310 - 34,877,919 (+)NCBI
SpeTri2.0NW_0049367211,107,697 - 1,118,313 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,330,215 - 46,349,978 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,335,095 - 46,353,583 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,891,024 - 11,911,267 (+)NCBIVero_WHO_p1.0
Ccdc22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624893971,688 - 1,008,460 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 22 2 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000013446   ⟹   ENSSSCP00000013086
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX43,285,246 - 43,307,204 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000036395   ⟹   ENSSSCP00000031043
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX43,285,246 - 43,307,204 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045146   ⟹   ENSSSCP00000033545
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX43,286,031 - 43,307,204 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075087   ⟹   ENSSSCP00000072212
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX43,285,246 - 43,303,864 (+)Ensembl
RefSeq Acc Id: XM_003135083   ⟹   XP_003135131
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X43,285,232 - 43,303,865 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003135131 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003135131   ⟸   XM_003135083
- UniProtKB: F1RW40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000072212   ⟸   ENSSSCT00000075087
RefSeq Acc Id: ENSSSCP00000031043   ⟸   ENSSSCT00000036395
RefSeq Acc Id: ENSSSCP00000033545   ⟸   ENSSSCT00000045146
RefSeq Acc Id: ENSSSCP00000013086   ⟸   ENSSSCT00000013446


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012297 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025077798 UniProtKB/TrEMBL
  ENSSSCG00030004512 UniProtKB/TrEMBL
  ENSSSCG00035063264 UniProtKB/TrEMBL
  ENSSSCG00040076288 UniProtKB/TrEMBL
  ENSSSCG00045009755 UniProtKB/TrEMBL
  ENSSSCG00050068465 UniProtKB/TrEMBL
  ENSSSCG00055002610 UniProtKB/TrEMBL
  ENSSSCG00060028036 UniProtKB/TrEMBL
  ENSSSCG00065069329 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013086 UniProtKB/TrEMBL
  ENSSSCP00000031043 UniProtKB/TrEMBL
  ENSSSCP00000033545 UniProtKB/TrEMBL
  ENSSSCP00000072212 UniProtKB/TrEMBL
  ENSSSCP00025049062 UniProtKB/TrEMBL
  ENSSSCP00030002639 UniProtKB/TrEMBL
  ENSSSCP00030002646 UniProtKB/TrEMBL
  ENSSSCP00030002663 UniProtKB/TrEMBL
  ENSSSCP00030002666 UniProtKB/TrEMBL
  ENSSSCP00035035435 UniProtKB/TrEMBL
  ENSSSCP00035035438 UniProtKB/TrEMBL
  ENSSSCP00035035449 UniProtKB/TrEMBL
  ENSSSCP00035035457 UniProtKB/TrEMBL
  ENSSSCP00040048778 UniProtKB/TrEMBL
  ENSSSCP00040048779 UniProtKB/TrEMBL
  ENSSSCP00040048780 UniProtKB/TrEMBL
  ENSSSCP00045011621 UniProtKB/TrEMBL
  ENSSSCP00050040333 UniProtKB/TrEMBL
  ENSSSCP00055004032 UniProtKB/TrEMBL
  ENSSSCP00055004055 UniProtKB/TrEMBL
  ENSSSCP00055004095 UniProtKB/TrEMBL
  ENSSSCP00055004114 UniProtKB/TrEMBL
  ENSSSCP00060016145 UniProtKB/TrEMBL
  ENSSSCP00065041675 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013446 UniProtKB/TrEMBL
  ENSSSCT00000036395 UniProtKB/TrEMBL
  ENSSSCT00000045146 UniProtKB/TrEMBL
  ENSSSCT00000075087 UniProtKB/TrEMBL
  ENSSSCT00025108318 UniProtKB/TrEMBL
  ENSSSCT00030006118 UniProtKB/TrEMBL
  ENSSSCT00030006129 UniProtKB/TrEMBL
  ENSSSCT00030006151 UniProtKB/TrEMBL
  ENSSSCT00030006160 UniProtKB/TrEMBL
  ENSSSCT00035085146 UniProtKB/TrEMBL
  ENSSSCT00035085151 UniProtKB/TrEMBL
  ENSSSCT00035085171 UniProtKB/TrEMBL
  ENSSSCT00035085183 UniProtKB/TrEMBL
  ENSSSCT00040106211 UniProtKB/TrEMBL
  ENSSSCT00040106212 UniProtKB/TrEMBL
  ENSSSCT00040106213 UniProtKB/TrEMBL
  ENSSSCT00045016839 UniProtKB/TrEMBL
  ENSSSCT00050093472 UniProtKB/TrEMBL
  ENSSSCT00055005215 UniProtKB/TrEMBL
  ENSSSCT00055005239 UniProtKB/TrEMBL
  ENSSSCT00055005288 UniProtKB/TrEMBL
  ENSSSCT00055005307 UniProtKB/TrEMBL
  ENSSSCT00060037968 UniProtKB/TrEMBL
  ENSSSCT00065095253 UniProtKB/TrEMBL
InterPro CCDC22 UniProtKB/TrEMBL
KEGG Report ssc:100512878 UniProtKB/TrEMBL
NCBI Gene CCDC22 ENTREZGENE
PANTHER PTHR15668 UniProtKB/TrEMBL
Pfam DUF812 UniProtKB/TrEMBL
UniProt A0A286ZPM3_PIG UniProtKB/TrEMBL
  A0A5G2RD19_PIG UniProtKB/TrEMBL
  A0A8D0V3E2_PIG UniProtKB/TrEMBL
  A0A8D0V9X1_PIG UniProtKB/TrEMBL
  A0A8D1G643_PIG UniProtKB/TrEMBL
  A0A8D1PGI7_PIG UniProtKB/TrEMBL
  A0A8D1PI39_PIG UniProtKB/TrEMBL
  A0A8D1PIU1_PIG UniProtKB/TrEMBL
  A0A8D1PJZ4_PIG UniProtKB/TrEMBL
  A0A8D1TN58_PIG UniProtKB/TrEMBL
  F1RW40 ENTREZGENE, UniProtKB/TrEMBL
  K7GT02_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86286 ENTREZGENE