CBARP (CACN subunit beta associated regulatory protein) - Rat Genome Database

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Gene: CBARP (CACN subunit beta associated regulatory protein) Sus scrofa
Analyze
Symbol: CBARP
Name: CACN subunit beta associated regulatory protein
RGD ID: 14252272
Description: INVOLVED IN negative regulation of calcium ion transmembrane transport (ortholog); negative regulation of voltage-gated calcium channel activity (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); Peutz-Jeghers syndrome (ortholog); FOUND IN growth cone (ortholog); plasma membrane (ortholog); secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C2H19orf26; CACN beta subunit associated regulatory protein; voltage-dependent calcium channel beta subunit-associated regulatory protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,221,171 - 77,230,056 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,220,790 - 77,230,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,823,483 - 77,831,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CBARP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,221,171 - 77,230,056 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,220,790 - 77,230,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,823,483 - 77,831,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CBARP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl191,228,287 - 1,238,027 (-)EnsemblGRCh38hg38GRCh38
GRCh38191,228,287 - 1,238,512 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37191,228,286 - 1,238,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,180,947 - 1,188,990 (-)NCBINCBI36hg18NCBI36
Build 34191,180,954 - 1,188,841NCBI
Celera191,164,180 - 1,172,223 (-)NCBI
Cytogenetic Map19p13.3NCBI
HuRef191,005,343 - 1,039,838 (-)NCBIHuRef
CHM1_1191,229,860 - 1,237,926 (-)NCBICHM1_1
Cbarp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,966,268 - 79,976,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl1079,966,285 - 79,976,669 (-)Ensembl
GRCm381080,130,434 - 80,140,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,130,451 - 80,140,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv371079,590,603 - 79,602,234 (-)NCBIGRCm37mm9NCBIm37
MGSCv361079,593,179 - 79,598,128 (-)NCBImm8
Celera1081,142,690 - 81,154,321 (-)NCBICelera
Cytogenetic Map10C1NCBI
Cbarp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,566,637 - 9,575,204 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)Ensembl
Rnor_6.0712,433,422 - 12,441,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,603,527 - 12,611,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,079,431 - 11,087,057 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1711,079,064 - 11,086,662 (+)NCBI
Celera77,743,241 - 7,750,842 (+)NCBICelera
Cytogenetic Map7q11NCBI
Cbarp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,671,726 - 6,677,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,671,719 - 6,678,338 (+)NCBIChiLan1.0ChiLan1.0
LOC100989336
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1191,212,854 - 1,220,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,212,854 - 1,220,104 (-)Ensemblpanpan1.1panPan2
CBARP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,554,162 - 57,559,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBI
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBI
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBI
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBI
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBI
LOC101976074
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,216,615 - 217,233,911 (+)NCBI
SpeTri2.0NW_004936588601,108 - 607,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103233598
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16999,327 - 1,006,632 (-)NCBI
Vero_WHO_p1.0NW_0236660817,857,295 - 7,864,976 (+)NCBI
Cbarp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,435,633 - 7,444,483 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 2 5 2 22 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014674   ⟹   ENSSSCP00000014279
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl277,221,171 - 77,230,056 (+)Ensembl
RefSeq Acc Id: XM_021084255   ⟹   XP_020939914
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,790 - 77,228,147 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084257   ⟹   XP_020939916
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,790 - 77,227,270 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084258   ⟹   XP_020939917
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,790 - 77,228,147 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084259   ⟹   XP_020939918
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,791 - 77,228,147 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002341709
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,791 - 77,230,418 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002341710
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1277,220,793 - 77,228,186 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020939914 (Get FASTA)   NCBI Sequence Viewer  
  XP_020939916 (Get FASTA)   NCBI Sequence Viewer  
  XP_020939917 (Get FASTA)   NCBI Sequence Viewer  
  XP_020939918 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020939914   ⟸   XM_021084255
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020939917   ⟸   XM_021084258
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020939916   ⟸   XM_021084257
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020939918   ⟸   XM_021084259
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000014279   ⟸   ENSSSCT00000014674


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034339 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000014279 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014674 ENTREZGENE, UniProtKB/TrEMBL
InterPro CBARP UniProtKB/TrEMBL
NCBI Gene CBARP ENTREZGENE
PANTHER PTHR28597 UniProtKB/TrEMBL
UniProt F1S6Q8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86220 ENTREZGENE