GDA (guanine deaminase) - Rat Genome Database

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Gene: GDA (guanine deaminase) Sus scrofa
Analyze
Symbol: GDA
Name: guanine deaminase
RGD ID: 14252184
Description: ENCODES a protein that exhibits guanine deaminase activity (ortholog); INVOLVED IN positive regulation of microtubule polymerization (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,402,117 - 225,589,830 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,425,389 - 225,589,835 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,188,929 - 252,201,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
GDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,402,117 - 225,589,830 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,425,389 - 225,589,835 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,188,929 - 252,201,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl972,114,595 - 72,257,193 (+)EnsemblGRCh38hg38GRCh38
GRCh38972,114,595 - 72,256,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37974,729,524 - 74,868,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36973,954,113 - 74,056,960 (+)NCBINCBI36hg18NCBI36
Build 34971,993,846 - 72,096,693NCBI
Celera945,336,999 - 45,439,843 (+)NCBI
Cytogenetic Map9q21.13NCBI
HuRef944,551,284 - 44,688,805 (+)NCBIHuRef
CHM1_1974,876,140 - 75,013,785 (+)NCBICHM1_1
Gda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391921,368,671 - 21,450,025 (-)NCBIGRCm39mm39
GRCm39 Ensembl1921,368,671 - 21,450,809 (-)Ensembl
GRCm381921,391,307 - 21,472,661 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1921,391,307 - 21,473,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv371921,465,797 - 21,547,151 (-)NCBIGRCm37mm9NCBIm37
MGSCv361921,458,404 - 21,539,758 (-)NCBImm8
Celera1922,118,313 - 22,200,564 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1914.32NCBI
Gda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21218,903,045 - 218,982,360 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1218,906,815 - 218,982,416 (-)Ensembl
Rnor_6.01238,982,542 - 239,057,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,982,392 - 239,057,732 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,267,039 - 246,345,967 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41224,579,794 - 224,655,298 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11224,743,773 - 224,819,377 (-)NCBI
Celera1216,146,233 - 216,221,719 (-)NCBICelera
Cytogenetic Map1q51NCBI
Gda
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955434983,388 - 1,049,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955434983,388 - 1,050,413 (-)NCBIChiLan1.0ChiLan1.0
GDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1970,891,615 - 70,994,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl970,891,319 - 70,994,574 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0952,559,752 - 52,662,886 (-)NCBIMhudiblu_PPA_v0panPan3
GDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,506,598 - 85,586,212 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,444,917 - 85,586,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,972,183 - 86,051,720 (-)NCBI
ROS_Cfam_1.0185,957,462 - 86,037,026 (-)NCBI
UMICH_Zoey_3.1185,718,567 - 85,798,015 (-)NCBI
UNSW_CanFamBas_1.0185,423,312 - 85,502,937 (-)NCBI
UU_Cfam_GSD_1.0186,182,014 - 86,261,677 (-)NCBI
Gda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947132,890,190 - 132,981,107 (-)NCBI
SpeTri2.0NW_0049365038,191,925 - 8,279,806 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11283,195,746 - 83,305,181 (+)NCBI
ChlSab1.1 Ensembl1283,195,994 - 83,306,792 (+)Ensembl
Vero_WHO_p1.0NW_02366603871,615,877 - 71,727,012 (+)NCBI
Gda
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624736836,283 - 914,616 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system reproductive system
High
Medium 8
Low 6 5 1
Below cutoff 1 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021064839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000062433   ⟹   ENSSSCP00000052635
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1225,425,483 - 225,589,830 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079287   ⟹   ENSSSCP00000067573
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1225,402,117 - 225,589,827 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083639   ⟹   ENSSSCP00000062716
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1225,425,483 - 225,589,820 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089335   ⟹   ENSSSCP00000071627
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1225,425,480 - 225,585,991 (+)Ensembl
RefSeq Acc Id: XM_021064839   ⟹   XP_020920498
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11225,425,389 - 225,589,835 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020920498 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020920498   ⟸   XM_021064839
- Sequence:
RefSeq Acc Id: ENSSSCP00000062716   ⟸   ENSSSCT00000083639
RefSeq Acc Id: ENSSSCP00000071627   ⟸   ENSSSCT00000089335
RefSeq Acc Id: ENSSSCP00000067573   ⟸   ENSSSCT00000079287
RefSeq Acc Id: ENSSSCP00000052635   ⟸   ENSSSCT00000062433
Protein Domains
Amidohydro-rel


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034919 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028543 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000052635 UniProtKB/TrEMBL
  ENSSSCP00000062716 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000067573 UniProtKB/TrEMBL
  ENSSSCP00000071627 UniProtKB/TrEMBL
  ENSSSCP00070048682 UniProtKB/TrEMBL
  ENSSSCP00070048685 UniProtKB/TrEMBL
  ENSSSCP00070048687 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062433 UniProtKB/TrEMBL
  ENSSSCT00000079287 UniProtKB/TrEMBL
  ENSSSCT00000083639 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000089335 UniProtKB/TrEMBL
  ENSSSCT00070057264 UniProtKB/TrEMBL
  ENSSSCT00070057267 UniProtKB/TrEMBL
  ENSSSCT00070057269 UniProtKB/TrEMBL
Gene3D-CATH 2.30.40.10 UniProtKB/TrEMBL
InterPro Amidohydro-rel UniProtKB/TrEMBL
  Guanine_deaminase UniProtKB/TrEMBL
  Metal-dep_hydrolase_composite UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
NCBI Gene GDA ENTREZGENE
PANTHER PTHR11271:SF6 UniProtKB/TrEMBL
Pfam Amidohydro_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF51338 UniProtKB/TrEMBL
  SSF51556 UniProtKB/TrEMBL
TIGRFAMs guan_deamin UniProtKB/TrEMBL
UniProt A0A287B7Y9_PIG UniProtKB/TrEMBL
  A0A4X1W3V0_PIG UniProtKB/TrEMBL
  A0A4X1W562_PIG UniProtKB/TrEMBL
  A0A4X1W567_PIG UniProtKB/TrEMBL
  A0A5G2QG09_PIG UniProtKB/TrEMBL
  A0A5G2RAD6_PIG UniProtKB/TrEMBL
  A0A5G2RBS6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88393 ENTREZGENE