LOC396685 (serpin A3-8) - Rat Genome Database

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Gene: LOC396685 (serpin A3-8) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC396685
Name: serpin A3-8
RGD ID: 14251769
Description: ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (inferred); FOUND IN chromaffin granule (inferred); cytoplasmic vesicle (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-1-antichymotrypsin 3; SERPINA3-3
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.17115,941,627 - 115,950,463 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,016,238 - 123,025,025 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12119105   PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Variants

.
Variants in LOC396685
801 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013978400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ293891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU468597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013978400   ⟹   XP_013833854
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17115,941,627 - 115,950,463 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013833854 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAC06756 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000002691
  ENSSSCP00000002691.4
  ENSSSCP00035047438.1
  ENSSSCP00070001110.1
RefSeq Acc Id: XP_013833854   ⟸   XM_013978400
- UniProtKB: F1SCD0 (UniProtKB/TrEMBL),   A0A4X1SFV1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
SERPIN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054220 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035079919 UniProtKB/TrEMBL
  ENSSSCG00070000680 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002760 ENTREZGENE
  ENSSSCT00000002760.5 UniProtKB/TrEMBL
  ENSSSCT00035109344.1 UniProtKB/TrEMBL
  ENSSSCT00070001270.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
InterPro Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
KEGG Report ssc:396685 UniProtKB/TrEMBL
NCBI Gene LOC396685 ENTREZGENE
PANTHER ALPHA-1-ANTICHYMOTRYPSIN UniProtKB/TrEMBL
  PTHR11461 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt A0A4X1SFV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BH12_PIG UniProtKB/TrEMBL
  F1SCD0 ENTREZGENE, UniProtKB/TrEMBL