PTX3 (pentraxin 3) - Rat Genome Database

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Pathways
Gene: PTX3 (pentraxin 3) Sus scrofa
Analyze
Symbol: PTX3
Name: pentraxin 3
RGD ID: 14248854
Description: ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (inferred); complement component C1q complex binding (inferred); identical protein binding (inferred); INVOLVED IN extracellular matrix organization (inferred); host-mediated suppression of symbiont invasion (inferred); immune response (inferred); ASSOCIATED WITH Arsenic Poisoning (ortholog); cystic fibrosis (ortholog); Diabetic Foot (ortholog); FOUND IN extracellular matrix (inferred); extracellular region (inferred); extracellular space (inferred); INTERACTS WITH bisphenol A; cadmium atom; N-acetyl-L-cysteine
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: pentraxin 3, long; pentraxin-related protein PTX3; PTX-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1397,273,594 - 97,279,569 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11397,273,594 - 97,279,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,440,917 - 105,446,892 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22120828   PMID:28039065   PMID:30032202   PMID:33875620  


Genomics

Comparative Map Data
PTX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1397,273,594 - 97,279,569 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11397,273,594 - 97,279,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,440,917 - 105,446,892 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383157,436,850 - 157,443,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3157,436,850 - 157,443,633 (+)Ensemblhg38GRCh38
GRCh373157,154,639 - 157,161,422 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363158,637,301 - 158,644,071 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343158,637,308 - 158,644,078NCBI
Celera3155,578,255 - 155,585,092 (+)NCBICelera
Cytogenetic Map3q25.32NCBI
HuRef3154,550,694 - 154,557,531 (+)NCBIHuRef
CHM1_13157,117,566 - 157,124,403 (+)NCBICHM1_1
T2T-CHM13v2.03160,211,418 - 160,218,201 (+)NCBIT2T-CHM13v2.0
Ptx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39366,127,308 - 66,133,227 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl366,127,331 - 66,133,226 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38366,219,887 - 66,225,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl366,219,910 - 66,225,805 (+)Ensemblmm10GRCm38
MGSCv37366,023,809 - 66,029,728 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36366,307,812 - 66,313,734 (+)NCBIMGSCv36mm8
Celera366,363,920 - 66,369,839 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
Ptx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82152,797,563 - 152,803,372 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2152,781,955 - 152,803,372 (+)EnsemblGRCr8
mRatBN7.22150,487,513 - 150,493,323 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2150,487,513 - 150,493,323 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2157,593,206 - 157,599,014 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02155,643,731 - 155,649,539 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02150,276,449 - 150,282,257 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02158,097,843 - 158,103,653 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2158,097,843 - 158,103,653 (+)Ensemblrn6Rnor6.0
Rnor_5.02177,457,263 - 177,463,073 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42156,089,917 - 156,095,726 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2144,894,946 - 144,900,755 (+)NCBICelera
Cytogenetic Map2q31NCBI
Ptx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,366,925 - 8,372,411 (+)Ensembl
ChiLan1.0NW_0049554488,366,795 - 8,373,010 (+)NCBIChiLan1.0ChiLan1.0
PTX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,347,564 - 155,354,440 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13155,347,508 - 155,359,171 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03154,485,470 - 154,492,293 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13162,537,440 - 162,544,263 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3162,537,577 - 162,543,652 (+)EnsemblpanPan2panpan1.1
PTX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12350,952,835 - 50,958,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2350,952,885 - 50,958,167 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2350,825,322 - 50,831,079 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02351,586,874 - 51,592,673 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2351,586,147 - 51,592,233 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12351,169,291 - 51,175,068 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02351,222,224 - 51,228,028 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02351,507,584 - 51,513,394 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560285,424,779 - 85,430,719 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365194,303,464 - 4,309,173 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365194,303,549 - 4,309,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,320,592 - 33,327,236 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1533,321,208 - 33,327,268 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660415,897,822 - 5,904,486 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473035,125,605 - 35,131,367 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473035,125,536 - 35,131,645 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in PTX3
119 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 4 13 11 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000012837   ⟹   ENSSSCP00000012497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1397,273,594 - 97,279,569 (+)Ensembl
RefSeq Acc Id: NM_001244783   ⟹   NP_001231712
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11397,273,594 - 97,279,570 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231712   ⟸   NM_001244783
- Peptide Label: precursor
- UniProtKB: A0A8D0RGD4 (UniProtKB/TrEMBL),   F1SJM0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000012497   ⟸   ENSSSCT00000012837


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015044016 UniProtKB/TrEMBL
  ENSSSCG00025028813 UniProtKB/TrEMBL
  ENSSSCG00030010968 UniProtKB/TrEMBL
  ENSSSCG00035046114 UniProtKB/TrEMBL
  ENSSSCG00040008409 UniProtKB/TrEMBL
  ENSSSCG00045038887 UniProtKB/TrEMBL
  ENSSSCG00050045460 UniProtKB/TrEMBL
  ENSSSCG00055004342 UniProtKB/TrEMBL
  ENSSSCG00060011694 UniProtKB/TrEMBL
  ENSSSCG00065057836 UniProtKB/TrEMBL
  ENSSSCG00070001481 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012837 ENTREZGENE
  ENSSSCT00000012837.5 UniProtKB/TrEMBL
  ENSSSCT00015058673.1 UniProtKB/TrEMBL
  ENSSSCT00025039150.1 UniProtKB/TrEMBL
  ENSSSCT00030015054.1 UniProtKB/TrEMBL
  ENSSSCT00035061301.1 UniProtKB/TrEMBL
  ENSSSCT00040010990.1 UniProtKB/TrEMBL
  ENSSSCT00045067565.1 UniProtKB/TrEMBL
  ENSSSCT00050061898.1 UniProtKB/TrEMBL
  ENSSSCT00055008569.1 UniProtKB/TrEMBL
  ENSSSCT00060015281.1 UniProtKB/TrEMBL
  ENSSSCT00065079116.1 UniProtKB/TrEMBL
  ENSSSCT00070002787.1 UniProtKB/TrEMBL
  ENSSSCT00070002796.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Pentaxin_CS UniProtKB/TrEMBL
  Pentraxin-related UniProtKB/TrEMBL
  PTX3 UniProtKB/TrEMBL
NCBI Gene PTX3 ENTREZGENE
PANTHER PENTRAXIN-RELATED PROTEIN PTX3 UniProtKB/TrEMBL
  PTHR46943 UniProtKB/TrEMBL
Pfam Pentaxin UniProtKB/TrEMBL
PRINTS PENTAXIN UniProtKB/TrEMBL
PROSITE PTX_1 UniProtKB/TrEMBL
  PTX_2 UniProtKB/TrEMBL
SMART PTX UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A4X1SJS5_PIG UniProtKB/TrEMBL
  A0A4X1SK74_PIG UniProtKB/TrEMBL
  A0A8D0NSX3_PIG UniProtKB/TrEMBL
  A0A8D0RGD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DAY3_PIG UniProtKB/TrEMBL
  A0A8D1LA93_PIG UniProtKB/TrEMBL
  F1SJM0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92000 ENTREZGENE