REC114 (REC114 meiotic recombination protein) - Rat Genome Database

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Gene: REC114 (REC114 meiotic recombination protein) Sus scrofa
Analyze
Symbol: REC114
Name: REC114 meiotic recombination protein
RGD ID: 14248490
Description: INVOLVED IN meiotic DNA double-strand break formation (inferred); oogenesis (inferred); spermatogenesis (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN chromosome (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C7H15orf60; meiotic recombination protein REC114
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,838,480 - 59,941,418 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,833,229 - 59,941,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,461,651 - 64,624,626 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
REC114
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,838,480 - 59,941,418 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,833,229 - 59,941,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,461,651 - 64,624,626 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REC114
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381573,443,164 - 73,560,013 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1573,443,164 - 73,560,013 (+)EnsemblGRCh38hg38GRCh38
GRCh371573,735,505 - 73,852,354 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361571,522,552 - 71,639,407 (+)NCBINCBI36Build 36hg18NCBI36
Celera1550,614,105 - 50,730,994 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1550,566,841 - 50,683,647 (+)NCBIHuRef
CHM1_11573,853,448 - 73,970,304 (+)NCBICHM1_1
T2T-CHM13v2.01571,260,317 - 71,377,167 (+)NCBIT2T-CHM13v2.0
Rec114
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,560,139 - 58,729,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl958,560,133 - 58,651,247 (-)EnsemblGRCm39 Ensembl
GRCm38958,652,856 - 58,822,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,652,850 - 58,743,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,500,663 - 58,589,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36958,450,993 - 58,539,694 (-)NCBIMGSCv36mm8
MGSCv36959,191,399 - 59,279,646 (-)NCBIMGSCv36mm8
Celera955,885,715 - 55,975,058 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.79NCBI
Rec114
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,959,181 - 68,117,296 (-)NCBIGRCr8
mRatBN7.2859,063,352 - 59,221,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,063,352 - 59,149,887 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx864,593,489 - 64,680,542 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,871,027 - 62,958,083 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,735,741 - 60,822,796 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0863,445,644 - 63,533,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,445,644 - 63,533,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,215,112 - 63,301,532 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,466,082 - 62,555,260 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1862,485,184 - 62,574,260 (-)NCBI
Celera858,522,634 - 58,608,087 (-)NCBICelera
Cytogenetic Map8q24NCBI
Rec114
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,002,753 - 4,076,309 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,002,734 - 4,076,292 (-)NCBIChiLan1.0ChiLan1.0
REC114
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21662,671,681 - 62,784,477 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11566,836,070 - 66,948,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01552,357,979 - 52,470,811 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11571,116,084 - 71,228,098 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1571,116,084 - 71,228,098 (+)Ensemblpanpan1.1panPan2
REC114
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13036,744,066 - 36,846,483 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3036,743,667 - 36,846,474 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3036,680,388 - 36,782,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,951,785 - 37,053,701 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13036,903,361 - 37,005,927 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,929,425 - 37,031,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,185,272 - 37,288,070 (+)NCBIUU_Cfam_GSD_1.0
Rec114
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640114,722,390 - 114,898,076 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647132,639,208 - 32,746,136 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REC114
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,924,765 - 10,041,255 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl269,925,054 - 10,040,533 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048131,567,269 - 131,687,445 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rec114
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781818,921 - 902,746 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781818,542 - 902,484 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in REC114
2022 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 20 2 3 3
Below cutoff 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037005   ⟹   ENSSSCP00000058734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,838,480 - 59,941,418 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055501   ⟹   ENSSSCP00000040549
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,838,480 - 59,941,418 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065264   ⟹   ENSSSCP00000049887
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,838,480 - 59,941,418 (-)Ensembl
RefSeq Acc Id: XM_001928745   ⟹   XP_001928780
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,833,229 - 59,941,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656287   ⟹   XP_005656344
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,833,229 - 59,941,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656288   ⟹   XP_005656345
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,838,478 - 59,941,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656289   ⟹   XP_005656346
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,838,478 - 59,941,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099080   ⟹   XP_020954739
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,833,229 - 59,941,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099081   ⟹   XP_020954740
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,842,242 - 59,941,452 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005656344   ⟸   XM_005656287
- Peptide Label: isoform X1
- UniProtKB: A0A287A9S6 (UniProtKB/TrEMBL),   A0A4X1TIA3 (UniProtKB/TrEMBL),   A0A8D1TEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954739   ⟸   XM_021099080
- Peptide Label: isoform X5
- UniProtKB: A0A4X1TI99 (UniProtKB/TrEMBL),   A0A287B0F7 (UniProtKB/TrEMBL),   A0A8D0M6C7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001928780   ⟸   XM_001928745
- Peptide Label: isoform X3
- UniProtKB: A0A287BQ30 (UniProtKB/TrEMBL),   A0A8D0SEP9 (UniProtKB/TrEMBL),   A0A8D0M584 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656346   ⟸   XM_005656289
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005656345   ⟸   XM_005656288
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954740   ⟸   XM_021099081
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSSSCP00000049887   ⟸   ENSSSCT00000065264
RefSeq Acc Id: ENSSSCP00000040549   ⟸   ENSSSCT00000055501
RefSeq Acc Id: ENSSSCP00000058734   ⟸   ENSSSCT00000037005


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044926 UniProtKB/TrEMBL
  ENSSSCG00025047443 UniProtKB/TrEMBL
  ENSSSCG00035021595 UniProtKB/TrEMBL
  ENSSSCG00040048280 UniProtKB/TrEMBL
  ENSSSCG00045006920 UniProtKB/TrEMBL
  ENSSSCG00050037816 UniProtKB/TrEMBL
  ENSSSCG00055016919 UniProtKB/TrEMBL
  ENSSSCG00065048862 UniProtKB/TrEMBL
  ENSSSCG00070009726 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037005 ENTREZGENE
  ENSSSCT00000037005.2 UniProtKB/TrEMBL
  ENSSSCT00000065264 ENTREZGENE
  ENSSSCT00000065264.3 UniProtKB/TrEMBL
  ENSSSCT00005072456.1 UniProtKB/TrEMBL
  ENSSSCT00005072465.1 UniProtKB/TrEMBL
  ENSSSCT00025064530.1 UniProtKB/TrEMBL
  ENSSSCT00025064641.1 UniProtKB/TrEMBL
  ENSSSCT00035028170.1 UniProtKB/TrEMBL
  ENSSSCT00035028177.1 UniProtKB/TrEMBL
  ENSSSCT00035028181.1 UniProtKB/TrEMBL
  ENSSSCT00040065034.1 UniProtKB/TrEMBL
  ENSSSCT00045011513.1 UniProtKB/TrEMBL
  ENSSSCT00045011532.1 UniProtKB/TrEMBL
  ENSSSCT00045011567.1 UniProtKB/TrEMBL
  ENSSSCT00050050960.1 UniProtKB/TrEMBL
  ENSSSCT00055033467.1 UniProtKB/TrEMBL
  ENSSSCT00065066854.1 UniProtKB/TrEMBL
  ENSSSCT00070018850.1 UniProtKB/TrEMBL
  ENSSSCT00070018855.1 UniProtKB/TrEMBL
InterPro REC114L UniProtKB/TrEMBL
KEGG Report ssc:100154080 UniProtKB/TrEMBL
NCBI Gene REC114 ENTREZGENE
PANTHER MEIOTIC RECOMBINATION PROTEIN REC114 UniProtKB/TrEMBL
  PTHR34921 UniProtKB/TrEMBL
Pfam REC114-like UniProtKB/TrEMBL
UniProt A0A287A9S6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B0F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BQ30 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TI99 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TIA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M584 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M6C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SEP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TEH8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92192 ENTREZGENE