PAK1IP1 (PAK1 interacting protein 1) - Rat Genome Database

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Gene: PAK1IP1 (PAK1 interacting protein 1) Sus scrofa
Analyze
Symbol: PAK1IP1
Name: PAK1 interacting protein 1
RGD ID: 14247615
Description: ENCODES a protein that exhibits kinase activity (inferred); INVOLVED IN cell population proliferation (ortholog); roof of mouth development (ortholog); ASSOCIATED WITH cataract 13 with adult i phenotype (ortholog); genetic disease (ortholog); FOUND IN nucleolus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: p21-activated protein kinase-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,444,789 - 7,456,716 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,444,519 - 7,456,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,756,813 - 7,769,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
PAK1IP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,444,789 - 7,456,716 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,444,519 - 7,456,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,756,813 - 7,769,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAK1IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,690,865 - 10,709,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,694,972 - 10,709,782 (+)EnsemblGRCh38hg38GRCh38
GRCh37610,695,205 - 10,710,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36610,803,174 - 10,817,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 34610,803,173 - 10,817,954NCBI
Celera611,923,680 - 11,938,465 (+)NCBICelera
Cytogenetic Map6p24.2NCBI
HuRef610,570,804 - 10,585,589 (+)NCBIHuRef
CHM1_1610,697,301 - 10,712,085 (+)NCBICHM1_1
T2T-CHM13v2.0610,558,584 - 10,577,501 (+)NCBIT2T-CHM13v2.0
Pak1ip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,154,486 - 41,166,509 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,154,499 - 41,166,491 (+)EnsemblGRCm39 Ensembl
GRCm381341,001,010 - 41,013,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,001,023 - 41,013,015 (+)EnsemblGRCm38mm10GRCm38
MGSCv371341,096,379 - 41,108,402 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,012,234 - 41,023,985 (+)NCBIMGSCv36mm8
Celera1342,082,864 - 42,094,910 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.23NCBI
Pak1ip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81723,947,978 - 23,959,055 (-)NCBIGRCr8
mRatBN7.21723,742,217 - 23,753,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,741,414 - 23,753,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,611,940 - 23,623,124 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,215,408 - 25,226,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,552,909 - 23,564,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,579,987 - 21,591,064 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,580,087 - 21,591,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,562,522 - 23,573,599 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,710,400 - 29,721,477 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1723,412,456 - 23,423,529 (-)NCBICelera
Cytogenetic Map17p12NCBI
Pak1ip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554653,631,879 - 3,645,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554653,635,004 - 3,644,638 (-)NCBIChiLan1.0ChiLan1.0
PAK1IP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,344,114 - 25,359,542 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,333,827 - 21,349,016 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,535,863 - 10,550,978 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1610,815,335 - 10,830,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl610,815,335 - 10,830,168 (+)Ensemblpanpan1.1panPan2
PAK1IP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,436,179 - 10,446,078 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,436,226 - 10,445,853 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,384,972 - 10,394,877 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,540,481 - 10,550,356 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,540,507 - 10,550,321 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,369,541 - 10,379,384 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,416,760 - 10,426,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,737,265 - 11,747,145 (+)NCBIUU_Cfam_GSD_1.0
Pak1ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,982,872 - 13,991,316 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,250,808 - 2,260,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365342,251,512 - 2,260,260 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAK1IP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,435,120 - 61,448,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,434,774 - 61,448,906 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604410,726,914 - 10,740,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pak1ip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475615,192,462 - 15,204,872 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475615,194,191 - 15,205,163 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAK1IP1
796 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 3 5 2 9 2 3 3
Low 4 2 14
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000033062   ⟹   ENSSSCP00000030936
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,444,789 - 7,456,716 (+)Ensembl
RefSeq Acc Id: XM_001926200   ⟹   XP_001926235
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.177,444,519 - 7,456,719 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001926235   ⟸   XM_001926200
- UniProtKB: A0A480YUK6 (UniProtKB/TrEMBL),   A0A8D0ZN18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000030936   ⟸   ENSSSCT00000033062


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005001453 UniProtKB/TrEMBL
  ENSSSCG00015006394 UniProtKB/TrEMBL
  ENSSSCG00025060516 UniProtKB/TrEMBL
  ENSSSCG00035033200 UniProtKB/TrEMBL
  ENSSSCG00045013447 UniProtKB/TrEMBL
  ENSSSCG00055014540 UniProtKB/TrEMBL
  ENSSSCG00065047202 UniProtKB/TrEMBL
  ENSSSCG00070000771 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033062 ENTREZGENE
  ENSSSCT00000033062.2 UniProtKB/TrEMBL
  ENSSSCT00005002074.1 UniProtKB/TrEMBL
  ENSSSCT00005002094.1 UniProtKB/TrEMBL
  ENSSSCT00015008501.1 UniProtKB/TrEMBL
  ENSSSCT00015008524.1 UniProtKB/TrEMBL
  ENSSSCT00025082827.1 UniProtKB/TrEMBL
  ENSSSCT00025083005.1 UniProtKB/TrEMBL
  ENSSSCT00035043987.1 UniProtKB/TrEMBL
  ENSSSCT00035043992.1 UniProtKB/TrEMBL
  ENSSSCT00045022952.1 UniProtKB/TrEMBL
  ENSSSCT00045022966.1 UniProtKB/TrEMBL
  ENSSSCT00055028652.1 UniProtKB/TrEMBL
  ENSSSCT00055028717.1 UniProtKB/TrEMBL
  ENSSSCT00065064542.1 UniProtKB/TrEMBL
  ENSSSCT00070001468.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100156606 UniProtKB/TrEMBL
NCBI Gene PAK1IP1 ENTREZGENE
PANTHER P21-ACTIVATED PROTEIN KINASE-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PAK1 INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A480YUK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SG98_PIG UniProtKB/TrEMBL
  A0A8D0HYP2_PIG UniProtKB/TrEMBL
  A0A8D0LD71_PIG UniProtKB/TrEMBL
  A0A8D0MGU5_PIG UniProtKB/TrEMBL
  A0A8D0MGZ0_PIG UniProtKB/TrEMBL
  A0A8D0ST13_PIG UniProtKB/TrEMBL
  A0A8D0ZN18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Z022_PIG UniProtKB/TrEMBL
  K7GSP8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91157 ENTREZGENE