SLC25A40 (solute carrier family 25 member 40) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC25A40 (solute carrier family 25 member 40) Sus scrofa
Analyze
Symbol: SLC25A40
Name: solute carrier family 25 member 40
RGD ID: 14247386
Description: ENCODES a protein that exhibits glutathione transmembrane transporter activity (inferred); INVOLVED IN erythrocyte development (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,481,564 - 92,528,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,481,524 - 92,526,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,932,475 - 101,963,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC25A40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,481,564 - 92,528,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,481,524 - 92,526,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,932,475 - 101,963,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38787,833,568 - 87,876,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl787,833,568 - 87,876,360 (-)EnsemblGRCh38hg38GRCh38
GRCh37787,462,883 - 87,505,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36787,303,353 - 87,343,604 (-)NCBINCBI36Build 36hg18NCBI36
Celera782,168,374 - 82,210,252 (-)NCBICelera
Cytogenetic Map7q21.12NCBI
HuRef782,073,743 - 82,115,567 (-)NCBIHuRef
CHM1_1787,393,992 - 87,435,858 (-)NCBICHM1_1
T2T-CHM13v2.0789,083,493 - 89,126,273 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2786,795,132 - 86,837,010 (-)NCBI
Slc25a40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3958,472,730 - 8,504,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl58,472,850 - 8,504,797 (+)EnsemblGRCm39 Ensembl
GRCm3858,422,730 - 8,454,839 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,422,850 - 8,454,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv3758,422,850 - 8,454,793 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3658,428,844 - 8,465,984 (+)NCBIMGSCv36mm8
Celera58,343,144 - 8,375,151 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.43NCBI
Slc25a40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8426,544,288 - 26,631,439 (-)NCBIGRCr8
mRatBN7.2425,631,447 - 25,676,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl425,589,360 - 25,676,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx430,621,186 - 30,666,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0426,547,418 - 26,592,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0424,921,313 - 24,966,307 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0422,619,700 - 22,661,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl422,576,576 - 22,661,722 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,551,248 - 22,593,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4421,497,685 - 21,524,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1421,472,004 - 21,511,352 (+)NCBI
Celera421,105,789 - 21,162,433 (-)NCBICelera
Cytogenetic Map4q12NCBI
Slc25a40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554325,190,676 - 5,244,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554325,191,197 - 5,244,587 (-)NCBIChiLan1.0ChiLan1.0
SLC25A40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26105,715,223 - 105,758,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17153,979,861 - 154,022,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0779,830,280 - 79,873,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1793,478,728 - 93,521,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl793,478,733 - 93,521,459 (-)Ensemblpanpan1.1panPan2
SLC25A40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11413,933,137 - 13,983,722 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1413,933,369 - 13,983,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1413,504,520 - 13,555,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01413,697,708 - 13,748,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1413,697,740 - 13,748,520 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11413,901,368 - 13,952,175 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01413,626,981 - 13,677,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01413,911,046 - 13,963,517 (-)NCBIUU_Cfam_GSD_1.0
Slc25a40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511826,965,878 - 27,013,836 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936763986,843 - 1,036,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936763987,464 - 1,036,091 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12161,062,656 - 61,117,659 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2161,063,472 - 61,115,217 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604242,957,628 - 43,012,833 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248095,494,304 - 5,555,309 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248095,494,470 - 5,554,948 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A40
828 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000028088   ⟹   ENSSSCP00000020586
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,481,564 - 92,526,356 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000060095   ⟹   ENSSSCP00000032685
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,481,567 - 92,528,186 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000077856   ⟹   ENSSSCP00000073251
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,481,564 - 92,523,594 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000085669   ⟹   ENSSSCP00000068833
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl992,481,775 - 92,524,538 (+)Ensembl
RefSeq Acc Id: XM_021102524   ⟹   XP_020958183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102525   ⟹   XP_020958184
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,782 - 92,526,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102526   ⟹   XP_020958185
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,482,213 - 92,526,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102527   ⟹   XP_020958186
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,338 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347059
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,281 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347060
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,287 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347061
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,281 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347062
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,287 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347063
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,525 - 92,526,358 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347064
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1992,481,524 - 92,526,281 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020958183   ⟸   XM_021102524
- UniProtKB: A0A480EMB8 (UniProtKB/TrEMBL),   A0A4X1T1T6 (UniProtKB/TrEMBL),   A0A8D1J0F9 (UniProtKB/TrEMBL),   A0A8D1LR03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958186   ⟸   XM_021102527
- UniProtKB: A0A480EMB8 (UniProtKB/TrEMBL),   A0A4X1T1T6 (UniProtKB/TrEMBL),   A0A8D1J0F9 (UniProtKB/TrEMBL),   A0A8D1LR03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958184   ⟸   XM_021102525
- UniProtKB: A0A480EMB8 (UniProtKB/TrEMBL),   A0A4X1T1T6 (UniProtKB/TrEMBL),   A0A8D1J0F9 (UniProtKB/TrEMBL),   A0A8D1LR03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958185   ⟸   XM_021102526
- UniProtKB: A0A480EMB8 (UniProtKB/TrEMBL),   A0A4X1T1T6 (UniProtKB/TrEMBL),   A0A8D1J0F9 (UniProtKB/TrEMBL),   A0A8D1LR03 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000032685   ⟸   ENSSSCT00000060095
Ensembl Acc Id: ENSSSCP00000068833   ⟸   ENSSSCT00000085669
Ensembl Acc Id: ENSSSCP00000020586   ⟸   ENSSSCT00000028088
Ensembl Acc Id: ENSSSCP00000073251   ⟸   ENSSSCT00000077856


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026177 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015063064 UniProtKB/TrEMBL
  ENSSSCG00025028247 UniProtKB/TrEMBL
  ENSSSCG00030021795 UniProtKB/TrEMBL
  ENSSSCG00035060119 UniProtKB/TrEMBL
  ENSSSCG00040062549 UniProtKB/TrEMBL
  ENSSSCG00045032954 UniProtKB/TrEMBL
  ENSSSCG00050021344 UniProtKB/TrEMBL
  ENSSSCG00055007709 UniProtKB/TrEMBL
  ENSSSCG00060067243 UniProtKB/TrEMBL
  ENSSSCG00065035047 UniProtKB/TrEMBL
  ENSSSCG00070005852 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028088 ENTREZGENE
  ENSSSCT00000028088.3 UniProtKB/TrEMBL
  ENSSSCT00000060095 ENTREZGENE
  ENSSSCT00000060095.2 UniProtKB/TrEMBL
  ENSSSCT00000077856 ENTREZGENE
  ENSSSCT00000077856.2 UniProtKB/TrEMBL
  ENSSSCT00000085669 ENTREZGENE
  ENSSSCT00000085669.2 UniProtKB/TrEMBL
  ENSSSCT00015084450.1 UniProtKB/TrEMBL
  ENSSSCT00025038414.1 UniProtKB/TrEMBL
  ENSSSCT00030030235.1 UniProtKB/TrEMBL
  ENSSSCT00035080629.1 UniProtKB/TrEMBL
  ENSSSCT00035080637.1 UniProtKB/TrEMBL
  ENSSSCT00040085358.1 UniProtKB/TrEMBL
  ENSSSCT00045056378.1 UniProtKB/TrEMBL
  ENSSSCT00045056595.1 UniProtKB/TrEMBL
  ENSSSCT00050028789.1 UniProtKB/TrEMBL
  ENSSSCT00055015119.1 UniProtKB/TrEMBL
  ENSSSCT00060091760.1 UniProtKB/TrEMBL
  ENSSSCT00065047715.1 UniProtKB/TrEMBL
  ENSSSCT00065047725.1 UniProtKB/TrEMBL
  ENSSSCT00070011185.1 UniProtKB/TrEMBL
  ENSSSCT00070011203.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  Mtm1-like UniProtKB/TrEMBL
NCBI Gene SLC25A40 ENTREZGENE
PANTHER PTHR45760 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 40 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A480EMB8 ENTREZGENE
  A0A4X1T1T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QVF7_PIG UniProtKB/TrEMBL
  A0A5G2REX5_PIG UniProtKB/TrEMBL
  A0A8D0U8W9_PIG UniProtKB/TrEMBL
  A0A8D1J0F9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LR03 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480EMB8 UniProtKB/TrEMBL
  I3L974 UniProtKB/TrEMBL
VGNC ID VGNC:93015 ENTREZGENE