HPF1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 14 | 20,014,274 - 20,039,332 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 20,014,254 - 20,037,791 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 21,313,121 - 21,329,267 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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HPF1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 4 | 169,729,470 - 169,757,944 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 169,729,470 - 169,757,944 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 170,650,621 - 170,679,095 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 170,887,194 - 170,915,668 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 167,983,601 - 168,012,093 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q33 | NCBI | | | | | HuRef | 4 | 166,405,437 - 166,433,881 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 170,627,188 - 170,655,678 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 173,089,586 - 173,118,075 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Hpf1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 61,342,533 - 61,360,615 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 61,343,452 - 61,361,705 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 60,890,392 - 60,907,580 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 60,890,418 - 60,908,671 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 63,369,248 - 63,386,369 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 63,648,378 - 63,799,724 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 63,457,542 - 63,474,667 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | B3.1 | NCBI | | | | | cM Map | 8 | 30.9 | NCBI | | | | |
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Hpf1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 16 | 34,211,971 - 34,230,551 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 16 | 29,203,749 - 29,219,651 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 16 | 29,183,256 - 29,219,716 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 16 | 32,798,620 - 32,814,503 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 16 | 36,232,348 - 36,248,229 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 16 | 32,433,869 - 32,449,730 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 16 | 32,524,128 - 32,540,233 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 16 | 32,519,924 - 32,540,217 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 16 | 32,358,968 - 32,375,073 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 16 | 32,523,650 - 32,539,537 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 16 | 32,523,724 - 32,539,655 (-) | NCBI | | | | | Celera | 16 | 29,198,257 - 29,214,140 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | p12 | NCBI | | | | |
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LOC102030373 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955403 | 36,594,269 - 36,622,724 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955403 | 36,594,319 - 36,621,020 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LOC100991754 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 167,506,176 - 167,534,704 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 167,862,061 - 167,890,643 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 161,949,343 - 161,977,887 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 174,021,060 - 174,049,213 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 174,021,060 - 174,049,213 (-) | Ensembl | panpan1.1 | | panPan2 | |
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HPF1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 25 | 20,622,781 - 20,645,459 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 25 | 20,622,774 - 20,644,822 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 25 | 21,257,443 - 21,279,874 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 25 | 20,798,645 - 20,821,091 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 25 | 20,798,649 - 20,820,457 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 25 | 20,682,932 - 20,705,345 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 25 | 20,618,769 - 20,641,207 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 25 | 20,718,372 - 20,740,811 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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LOC101970824 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LOC103236518 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 7 | 115,934,687 - 115,966,404 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 115,934,692 - 115,966,369 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 95,880,912 - 95,912,880 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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LOC101705414 (Heterocephalus glaber - naked mole-rat) |
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