H2AC11 (H2A clustered histone 11)

Gene: H2AC11 (H2A clustered histone 11) Sus scrofa

Analyze

Symbol:

H2AC11

Name:

H2A clustered histone 11 (Ensembl:histone H2A type 1)

RGD ID:

14246060

Description:

ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

histone H2A type 1; LOC110261666

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	21,220,798 - 21,223,126 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	21,220,803 - 21,221,687 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heterochromatin organization (IBA)

Cellular Component

chromosome (IEA)

nucleosome (IBA,IEA)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

enzyme binding (ISO)

nucleosomal DNA binding (IBA)

protein binding (ISO)

protein heterodimerization activity (IEA)

structural constituent of chromatin (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

H2AC11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	21,220,798 - 21,223,126 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	21,220,803 - 21,221,687 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

H2AC11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	27,133,043 - 27,133,535 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	27,133,043 - 27,133,535 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	27,100,822 - 27,101,314 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	27,208,800 - 27,211,050 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	27,208,799 - 27,211,049	NCBI
Celera	6	28,706,816 - 28,709,070 (+)	NCBI		Celera
Cytogenetic Map	6	p22.1	NCBI
HuRef	6	26,908,878 - 26,909,375 (+)	NCBI		HuRef
CHM1_1	6	27,103,139 - 27,103,636 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	27,001,858 - 27,002,350 (+)	NCBI		T2T-CHM13v2.0

H2ac7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	23,758,555 - 23,759,089 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	23,758,555 - 23,759,126 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	23,574,381 - 23,574,915 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	23,574,381 - 23,574,952 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	23,666,340 - 23,666,732 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	23,581,936 - 23,582,328 (+)	NCBI		MGSCv36	mm8
Celera	13	23,806,401 - 23,806,793 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	9.8	NCBI

Hist1h2ah
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,812,378 - 41,812,875 (+)	NCBI		GRCr8
mRatBN7.2	17	41,384,521 - 41,385,018 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	17	41,458,552 - 41,459,049 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	43,062,598 - 43,063,095 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,341,255 - 41,341,752 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,632,354 - 43,632,851 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	44,747,796 - 44,748,188 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,632,397 - 43,632,789 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	45,486,769 - 45,487,706 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	48,507,180 - 48,507,572 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	41,015,719 - 41,016,216 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

LOC100982169
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	41,778,697 - 41,781,552 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	37,780,168 - 37,780,711 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	26,966,232 - 26,968,585 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	27,627,997 - 27,630,234 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	27,628,025 - 27,628,417 (+)	Ensembl	panpan1.1		panPan2

H2AC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	25,000,243 - 25,001,749 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	25,000,401 - 25,000,793 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	24,856,042 - 24,857,410 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	25,189,348 - 25,190,709 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	25,189,363 - 25,189,755 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	24,964,690 - 24,965,156 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	25,017,638 - 25,018,999 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	26,481,678 - 26,483,045 (+)	NCBI		UU_Cfam_GSD_1.0

LOC106144641
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	821,802 - 822,543 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936671	2,799,038 - 2,799,430 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936671	2,798,987 - 2,800,593 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HIST1H2AM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	44,639,666 - 44,640,280 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	44,694,268 - 44,694,657 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	27,577,291 - 27,577,910 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in H2AC11
15 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021099839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021099839 ⟹ XP_020955498

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	21,220,803 - 21,221,687 (+)	NCBI

Sequence:

show sequence

CTACCACAAGCGAAGCTGCTGTCGCTATAATGTCGGGAAGAGGCAAACAGGGAGGCAAAGCCCG
CGCCAAGGCCAAGACTCGCTCCTCGCGGGCCGGGCTCCAGTTCCCGGTGGGTCGAGTGCACCGC
CTGCTCCGCAAGGGCAACTATGCCGAGCGGGTCGGCGCCGGCGCGCCGGTGTACTTGGCGGCGG
TGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAA
GACGCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCAACGACGAGGAGCTCAACAAGCTG
CTGGGCAAGGTCACTATCGCTCAGGGCGGTGTCTTGCCCAACATCCAAGCGGTGCTGCTGCCCA
AGAAGACTGAGAGCCACCACAAGGCCAAGGGCAAGTAATGGCCTAGATTTCGGCGACACGCATC
AAACCAAACCAAAGGCTCTTTTCAGAGCCACCCACATTTTCTGGAAAAGAACTTAACATCTATC
TTGTTTGGGAAGATGAAAAGAGATTTAATGTGAAAATTTCCTTAACTTCTAGTTTGGTCAAGTC
GAAGTGTGGTAAAAGGCTTCATATTTGAATTAAAAAGTAAAATGACTTCATAATGACACATTAG
GTTCATTGGCTGTGGAAAGACGGGCAGCTGAGTGTTTGGGGCGGGGAGTAGAGACTATTTCTAG
GGCGGCTTGTAAACTGTTTACTACAAATGAGCGGCTTTAAACAAATTCTCGACTCGGGAGGCCA
AAAGTTCAAAATCTAAGTGCTGCTAGGGTTCCTGCTGGAGTCTTGAGGGAGGAATCATTCTGTA
CTTGCCAGCTTCTGGTGGTTGCCAACAATTCCTTGGTTTGTGGCAGCATATCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_020955498	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000046618
	ENSSSCP00050035754.1

RefSeq Acc Id:	XP_020955498 ⟸ XM_021099839
- UniProtKB:	A0A287ARN9 (UniProtKB/TrEMBL), A0A4X1VJH6 (UniProtKB/TrEMBL), F2Z587 (UniProtKB/TrEMBL), A0A8D1N7B7 (UniProtKB/TrEMBL), A0A8D1QBH6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAK GK hide sequence

Protein Domains

Histone H2A C-terminal Histone H2A/H2B/H3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033451	Ensembl, ENTREZGENE
	ENSSSCG00050061089	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000050371	ENTREZGENE
	ENSSSCT00050083255.1	UniProtKB/TrEMBL
Gene3D-CATH	Histone, subunit A	UniProtKB/TrEMBL
InterPro	Histone-fold	UniProtKB/TrEMBL
	Histone_H2A	UniProtKB/TrEMBL
	Histone_H2A/H2B/H3	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
	Histone_H2A_CS	UniProtKB/TrEMBL
NCBI Gene	LOC110261666	ENTREZGENE
PANTHER	HISTONE H2A	UniProtKB/TrEMBL
	HISTONE H2A.J	UniProtKB/TrEMBL
Pfam	Histone	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
PRINTS	HISTONEH2A	UniProtKB/TrEMBL
PROSITE	HISTONE_H2A	UniProtKB/TrEMBL
SMART	H2A	UniProtKB/TrEMBL
Superfamily-SCOP	Histone-fold	UniProtKB/TrEMBL
UniProt	A0A287ARN9	ENTREZGENE
	A0A4X1VJH6	ENTREZGENE
	A0A8D1N7B7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1QBH6	ENTREZGENE
	F2Z587	ENTREZGENE
VGNC ID	VGNC:109787	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-13	H2AC11	H2A clustered histone 11	LOC110261666	histone H2A type 1	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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