LOC100525756 (DNA-directed RNA polymerase II subunit RPB11-a pseudogene) - Rat Genome Database

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Gene: LOC100525756 (DNA-directed RNA polymerase II subunit RPB11-a pseudogene) Sus scrofa
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Symbol: LOC100525756
Name: DNA-directed RNA polymerase II subunit RPB11-a pseudogene
RGD ID: 14242805
Description: ENCODES an pseudo that exhibits protein dimerization activity (inferred); RNA polymerase II activity (inferred); INVOLVED IN transcription by RNA polymerase II (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN DNA-directed RNA polymerase complex (inferred); nuclear DNA-directed RNA polymerase complex (inferred); nucleus (inferred)
Type: pseudo
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16107,462,166 - 107,462,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2699,927,314 - 99,927,807 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100525756
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16107,462,166 - 107,462,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2699,927,314 - 99,927,807 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2J3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387102,566,966 - 102,572,583 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7102,562,133 - 102,572,583 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl7102,537,918 - 102,572,653 (-)EnsemblGRCh38hg38GRCh38
GRCh377102,207,413 - 102,213,030 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,965,371 - 102,000,173 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map7q22.1NCBI
HuRef743,909,208 - 43,939,100 (-)NCBIHuRef
CHM1_17102,207,521 - 102,242,320 (-)NCBICHM1_1
T2T-CHM13v2.07103,884,489 - 103,890,107 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27101,538,667 - 101,573,469 (-)NCBI

Variants

.
Variants in LOC100525756
19 total Variants

Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AEMK02000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Ensembl Protein ENSSSCP00000004010.2
Protein Domains
DNA-directed RNA polymerase RBP11-like dimerisation


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003703 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004102.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.10 UniProtKB/TrEMBL
InterPro RBP11 UniProtKB/TrEMBL
  RBP11-like UniProtKB/TrEMBL
  RBP11-like_dimer UniProtKB/TrEMBL
  Rpo11-like UniProtKB/TrEMBL
NCBI Gene LOC100525756 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 UniProtKB/TrEMBL
Pfam RNA_pol_L_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55257 UniProtKB/TrEMBL
UniProt F1SBB9_PIG UniProtKB/TrEMBL