CHST14 (carbohydrate sulfotransferase 14)

Gene: CHST14 (carbohydrate sulfotransferase 14) Sus scrofa

Analyze

Symbol:

CHST14

Name:

carbohydrate sulfotransferase 14

RGD ID:

14242323

Description:

ENCODES a protein that exhibits N-acetylgalactosamine 4-O-sulfotransferase activity (inferred); sulfotransferase activity (inferred); transferase activity (inferred); INVOLVED IN dermatan sulfate biosynthetic process (ortholog); ASSOCIATED WITH Adducted Thumbs Syndrome (ortholog); autism spectrum disorder (ortholog); Bloom syndrome (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,845,835 - 130,846,965 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	130,845,103 - 130,847,203 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,930,319 - 145,932,401 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adducted Thumbs Syndrome (ISO)

autism spectrum disorder (ISO)

Bloom syndrome (ISO)

clubfoot (ISO)

colorectal cancer (ISO)

Craniofacial Abnormalities (ISO)

Ehlers-Danlos syndrome (ISO)

Ehlers-Danlos syndrome musculocontractural type 1 (ISO)

genetic disease (ISO)

Joint Instability (ISO)

Muscle Hypotonia (ISO)

Neoplasm Recurrence, Local (ISO)

Prostatic Neoplasms (ISO)

Spinal Cord Compression (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate biosynthetic process (IEA)

dermatan sulfate biosynthetic process (IEA,ISO)

dermatan sulfate proteoglycan metabolic process (IEA)

Cellular Component

Golgi apparatus (IEA)

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

N-acetylgalactosamine 4-O-sulfotransferase activity (IEA)

protein binding (ISO)

sulfotransferase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CHST14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,845,835 - 130,846,965 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	130,845,103 - 130,847,203 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,930,319 - 145,932,401 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHST14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,470,984 - 40,473,158 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	40,470,984 - 40,473,158 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	40,763,183 - 40,765,357 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	38,550,505 - 38,552,646 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	38,550,504 - 38,552,645	NCBI
Celera	15	17,529,304 - 17,531,501 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	17,607,018 - 17,609,215 (+)	NCBI		HuRef
CHM1_1	15	40,883,323 - 40,885,520 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	38,278,334 - 38,280,508 (+)	NCBI		T2T-CHM13v2.0

Chst14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	118,756,978 - 118,759,066 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	118,756,977 - 118,759,066 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	118,926,497 - 118,928,585 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	118,926,496 - 118,928,585 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	118,752,233 - 118,754,321 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	118,617,965 - 118,620,026 (+)	NCBI		MGSCv36	mm8
Celera	2	120,078,074 - 120,080,162 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.73	NCBI

Chst14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,370,348 - 126,372,405 (+)	NCBI		GRCr8
mRatBN7.2	3	105,916,481 - 105,918,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	105,916,466 - 105,918,548 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	109,589,573 - 109,591,630 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,185,126 - 118,187,183 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,845,493 - 115,847,550 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,734,105 - 110,736,162 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,734,105 - 110,736,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,272,042 - 117,274,099 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	105,439,600 - 105,441,657 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	104,829,671 - 104,831,728 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Chst14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	7,391,282 - 7,392,355 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	7,391,281 - 7,393,137 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHST14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	29,707,434 - 29,709,608 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	33,858,784 - 33,860,958 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	19,407,477 - 19,409,645 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	37,660,619 - 37,662,436 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	37,660,621 - 37,661,622 (+)	Ensembl	panpan1.1		panPan2

CHST14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	7,640,988 - 7,643,576 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	7,640,637 - 7,642,778 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	7,695,395 - 7,697,327 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	7,767,476 - 7,769,408 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	7,691,749 - 7,693,681 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	7,797,791 - 7,799,723 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	7,926,684 - 7,928,616 (+)	NCBI		UU_Cfam_GSD_1.0

Chst14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,079,826 - 86,084,278 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	3,930,388 - 3,931,518 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	3,930,167 - 3,932,356 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHST14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	42,538,380 - 42,540,588 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	42,539,203 - 42,540,333 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	98,429,750 - 98,431,975 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chst14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	7,769,478 - 7,770,602 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	7,769,254 - 7,771,368 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CHST14
19 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003121594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU234165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000005270 ⟹ ENSSSCP00000079406

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	130,845,835 - 130,846,965 (-)	Ensembl

RefSeq Acc Id:

XM_003121594 ⟹ XP_003121642

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	130,845,103 - 130,847,203 (-)	NCBI

Sequence:

show sequence

GCCGGGCGGGACATCCGGCCCAGGTCCCTCGCCGCGCCCGCCGCCCGCCGCCCGCTCCGGCGCC
GCAGCCCGGGAGTCGGCCACCCCCTCGCGCCGGGGCCTCCCACCAGCGCTCCCATTCCCTCCCC
TCTCCTGGCTGCACGGTCCCCAGCCCTCGGGCCCGCCCCTAGACCGAGCTCGCCTCCCGTACAG
CCCTCAGGTCGGCCGGGCCCGCGCAGGCCCCCGTCCCGGGAGCACGATGTTCCCCCGCCCGCTG
ACCCCGCTGGCGGCCCCAAATGGCGCCGAGCCCCTGGGCAGGGCGCTGAGGCGGGTCCCCTCGG
GCAGGGCCCGGGCCGGGCTGGGGGCGCCGCCCCTGCTGCTGCCGTCCATGCTGATGTTCGCCGT
GATCGTGGCCTCCAGCGGGCTGCTGCTCATGATCGAGCGGGGCATCCTGGCCGAGATGAAGCCC
CTTCCTCTGCACCCTCCCAACCGCGAGGGCGCGGTGTGGCGCGAGACGGTCCCCAGGTCTGGGG
GGCTGCTCCTCGATGCCGGGGACTCGGACTTGCAGGTGAGGCAAGACGTCCGGAACCGGACCTT
GAGGGCAGTGTGCGGACAACCAGGCATGCCCCGGGACCCCTGGGACTTGCCGGTGGGACAGCGG
CGCACCCTGCTGCGCCACATCCTCGTGAGTGACCGTTACCGCTTCCTCTACTGCTACGTGCCCA
AGGTGGCTTGCTCGAACTGGAAGCGGGTGCTGAAGGTGCTGGCGGGTGTCCTGGACAACGTGGA
CGTCCGCCTCAAGATGGACCACCGCAGCGACTTGGTGTTCCTGGCCGACCTACGGCCTGACGAG
ATTCGCTACCGCCTGCAGCACTACTTCAAGTTCCTGTTTGTGCGAGACCCCTTGGAACGCCTTC
TCTCTGCTTACCGCAACAAGTTTGGCGAGATTCGAGAGTACCAGCAGCGCTATGGGGCCGAGAT
CGTGAGGCGGTACCGGGCTGGAGCGGGACCCAGCCCCGCAGGGGACGATGTCACCTTCCCTGAG
TTCCTGAGATACCTGGTGGACGAGGACCCCGAGCGCATGAATGAGCACTGGATGCCCGTGTATC
ACCTCTGTCAGCCTTGTGCCGTGCGCTACGACTTTGTGGGTTCCTATGAGAGGCTGGAGGCAGA
CGCCAACCAGGTGCTGGAGTGGGTGCGGGCACCGCCCCATGTCCGATTTCCAGCTCGCCAGGCC
TGGTACCGGCCGGCTAGCCCAGAAAGCCTGCACTACCACCTGTGCAGTGCCCCCAGGGCCGTGC
TGCAGGATGTGTTACCTAAGTATATCCTGGACTTCTCCCTGTTTGCCTACCCACTGCCTAATGT
CACCAGGGAGGCCTGTCATCAGTAACCATGGGTGTGGGCCAGGAGCTGCTGGGGACTGGTTTTG
ACAATGCCAGTTTCTGTGTTACCATCTGCCATACAAAGAAACCCTGGCTCTGGGGCCTGGGGCT
TCTCCAGATGGAAAAGACTGCCTTTGGATGTTCCTTGTCCAGGGTGGGTGCCCACAGTGGCTCA
GAGGACAGGGTTGGACAGGTGATCTGGTGCTCTCCAAAGGGGAGGTTTCTTGGGGGGCCAGTGT
GATCCTTCTTGCCCTGGCAGAGCCAGATTCCAGTTTGCCAGTGAAGCAACACATCTGTCCTAAA
GATTGGCGGCAGGGCCCTGCTTGCCTGGATTGTGCAGTCCACTTAGTCCACCTTATTTTAAACC
TGTGGCCAAACTCAGGAGGTCTACCAGAGCTGGGATCCCTGTGGCCCATTCATCACTTCCATGT
GCCTCAGGGCTGGAGTCCGAAGTCGTGCCTTATGAATGACTTTTGTATCTTTCTACTTCAGACT
TAGAATTTCCTACACTTGCCAGATTCTTTTCATTTTTCCAAGGAAAGGAAAACTGAAAGGGCCC
TTGCCTGGTAGCACCAGGATCTGGCCCTGCAGCATCCAAAGATCCCTGTGTGGCTAGTGTATCT
TGCTGCCACTTTTTTAGTGCATTTATTTAAAATTTGTATTTTTTGATAGAACCTTTGAGAAGGC
TTTGTTTTCCCAATAGCTGAATTTTTAATAAAGCCATTTTGTATATAAAGTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003121642	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000079406.1

RefSeq Acc Id:

XP_003121642 ⟸ XM_003121594

- UniProtKB:

A0A8W4FJL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFPRPLTPLAAPNGAEPLGRALRRVPSGRARAGLGAPPLLLPSMLMFAVIVASSGLLLMIERGI
LAEMKPLPLHPPNREGAVWRETVPRSGGLLLDAGDSDLQVRQDVRNRTLRAVCGQPGMPRDPWD
LPVGQRRTLLRHILVSDRYRFLYCYVPKVACSNWKRVLKVLAGVLDNVDVRLKMDHRSDLVFLA
DLRPDEIRYRLQHYFKFLFVRDPLERLLSAYRNKFGEIREYQQRYGAEIVRRYRAGAGPSPAGD
DVTFPEFLRYLVDEDPERMNEHWMPVYHLCQPCAVRYDFVGSYERLEADANQVLEWVRAPPHVR
FPARQAWYRPASPESLHYHLCSAPRAVLQDVLPKYILDFSLFAYPLPNVTREACHQ

hide sequence

RefSeq Acc Id:

ENSSSCP00000079406 ⟸ ENSSSCT00000005270

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000004771	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000005270.3	UniProtKB/TrEMBL
InterPro	Carb_sulfotrans_8-10	UniProtKB/TrEMBL
	Sulfotransferase	UniProtKB/TrEMBL
NCBI Gene	CHST14	ENTREZGENE
PANTHER	CARBOHYDRATE SULFOTRANSFERASE	UniProtKB/TrEMBL
	CARBOHYDRATE SULFOTRANSFERASE 14	UniProtKB/TrEMBL
Pfam	Sulfotransfer_2	UniProtKB/TrEMBL
UniProt	A0A8W4FJL1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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