STRN4 (striatin 4) - Rat Genome Database
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Gene: STRN4 (striatin 4) Sus scrofa
Analyze
Symbol: STRN4
Name: striatin 4
RGD ID: 14241673
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-containing complex binding (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2I (ortholog); Walker-Warburg syndrome (ortholog); FOUND IN dendritic spine (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: striatin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,922,599 - 47,948,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,922,599 - 47,948,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,719,511 - 46,746,994 (-)EnsemblGRCh38hg38GRCh38
GRCh381946,719,509 - 46,746,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,222,768 - 47,249,707 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,914,608 - 51,941,560 (-)NCBINCBI36hg18NCBI36
Build 341951,914,609 - 51,941,527NCBI
Celera1944,026,298 - 44,053,250 (-)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,647,696 - 43,674,467 (-)NCBIHuRef
CHM1_11947,224,668 - 47,251,617 (-)NCBICHM1_1
Strn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,549,814 - 16,574,856 (+)NCBIGRCm39mm39
GRCm39 Ensembl716,549,814 - 16,574,856 (+)Ensembl
GRCm38716,815,889 - 16,840,931 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,815,889 - 16,840,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,401,238 - 17,426,280 (+)NCBIGRCm37mm9NCBIm37
MGSCv36715,974,411 - 15,999,425 (+)NCBImm8
Celera714,013,892 - 14,038,921 (+)NCBICelera
Cytogenetic Map7A2NCBI
Strn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,482,267 - 77,511,862 (+)NCBI
Rnor_6.0 Ensembl178,735,678 - 78,765,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,739,930 - 78,765,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,983,369 - 80,012,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,140,308 - 77,166,074 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,218,418 - 77,244,183 (+)NCBI
Celera171,971,158 - 71,996,922 (+)NCBICelera
Cytogenetic Map1q21NCBI
Strn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574752,848 - 771,666 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574752,848 - 771,664 (-)NCBIChiLan1.0ChiLan1.0
STRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,240,880 - 52,260,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBIMhudiblu_PPA_v0panPan3
STRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1109,176,983 - 109,202,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11109,176,955 - 109,203,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Strn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,073,924 - 40,100,822 (-)NCBI
ChlSab1.1 Ensembl640,075,007 - 40,100,885 (-)Ensembl
Strn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,858,107 - 6,883,514 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2 1 5 2 11 2 1
Low 7 2 2 12 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000003443   ⟹   ENSSSCP00000003360
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039431   ⟹   ENSSSCP00000038899
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069470   ⟹   ENSSSCP00000063806
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077804   ⟹   ENSSSCP00000073875
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,601,934 - 52,624,523 (-)Ensembl
RefSeq Acc Id: XM_003127236   ⟹   XP_003127284
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,601,934 - 52,627,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094615   ⟹   XP_020950274
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094616   ⟹   XP_020950275
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,601,934 - 52,627,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094617   ⟹   XP_020950276
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,601,934 - 52,627,906 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127284 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950274 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950275 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950276 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020950274   ⟸   XM_021094615
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020950275   ⟸   XM_021094616
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003127284   ⟸   XM_003127236
- Peptide Label: isoform X3
- UniProtKB: F1RM09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950276   ⟸   XM_021094617
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000038899   ⟸   ENSSSCT00000039431
RefSeq Acc Id: ENSSSCP00000063806   ⟸   ENSSSCT00000069470
RefSeq Acc Id: ENSSSCP00000003360   ⟸   ENSSSCT00000003443
RefSeq Acc Id: ENSSSCP00000073875   ⟸   ENSSSCT00000077804
Protein Domains
WD_REPEATS_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003104 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028175 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003360 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000038899 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000063806 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000073875 UniProtKB/TrEMBL
  ENSSSCP00070048015 UniProtKB/TrEMBL
  ENSSSCP00070048019 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003443 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000039431 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069470 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000077804 UniProtKB/TrEMBL
  ENSSSCT00070056519 UniProtKB/TrEMBL
  ENSSSCT00070056523 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Striatin_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100513929 UniProtKB/TrEMBL
NCBI Gene STRN4 ENTREZGENE
Pfam Striatin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A287A4V5_PIG UniProtKB/TrEMBL
  A0A4X1VW91_PIG UniProtKB/TrEMBL
  A0A4X1W3B3_PIG UniProtKB/TrEMBL
  A0A5G2QIR8_PIG UniProtKB/TrEMBL
  A0A5G2RBZ1_PIG UniProtKB/TrEMBL
  F1RM09 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93580 ENTREZGENE