SCYL1 (SCY1 like pseudokinase 1) - Rat Genome Database

Name: SCYL1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SCYL1 (SCY1 like pseudokinase 1) Sus scrofa

Analyze

Symbol:

SCYL1

Name:

SCY1 like pseudokinase 1

RGD ID:

14240815

Description:

ENCODES a protein that exhibits ATP binding (inferred); protein kinase activity (inferred); INVOLVED IN inflammatory response (ortholog); neuron development (ortholog); protein localization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive spinocerebellar ataxia 21 (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cis-Golgi network (inferred); COPI vesicle coat (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

N-terminal kinase-like protein; SCY1-like 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCYL1 (SCY1 like pseudokinase 1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Scyl1 (SCY1-like 1 (S. cerevisiae))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Scyl1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scyl1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCYL1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCYL1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scyl1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCYL1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scyl1 (SCY1 like pseudokinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,716,115 - 6,733,438 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,720,047 - 6,733,477 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,830,491 - 5,843,903 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

autosomal recessive spinocerebellar ataxia 21 (ISO)

Bardet-Biedl syndrome (ISO)

brachyolmia-amelogenesis imperfecta syndrome (ISO)

genetic disease (ISO)

glycogen storage disease V (ISO)

hereditary ataxia (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

spinocerebellar ataxia type 21 (ISO)

Spinocerebellar Ataxias (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inflammatory response (IEA,ISO)

neuron development (IEA,ISO)

protein localization (IEA,ISO)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IEA)

spinal cord motor neuron differentiation (IEA,ISO)

tRNA export from nucleus (IEA)

Cellular Component

cis-Golgi network (IEA)

COPI vesicle coat (IEA)

cytoplasm (IEA)

cytosol (IEA)

endoplasmic reticulum-Golgi intermediate compartment (IEA)

Golgi apparatus (IEA)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

SCYL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,716,115 - 6,733,438 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,720,047 - 6,733,477 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,830,491 - 5,843,903 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCYL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,525,083 - 65,538,704 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,525,077 - 65,538,704 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,292,554 - 65,306,175 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,049,124 - 65,062,758 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	65,049,158 - 65,062,750	NCBI
Celera	11	62,618,826 - 62,632,460 (+)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,619,558 - 61,633,190 (+)	NCBI		HuRef
CHM1_1	11	65,176,450 - 65,190,079 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,519,285 - 65,532,904 (+)	NCBI		T2T-CHM13v2.0

Scyl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,808,450 - 5,821,461 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,808,379 - 5,821,447 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,758,422 - 5,771,419 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,758,351 - 5,771,419 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,758,427 - 5,771,401 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,758,427 - 5,771,401 (-)	NCBI		MGSCv36	mm8
Celera	19	5,628,473 - 5,641,447 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Scyl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,475,198 - 212,489,285 (-)	NCBI		GRCr8
mRatBN7.2	1	203,045,776 - 203,059,550 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,045,741 - 203,059,533 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,398,680 - 211,413,229 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,491,271 - 218,504,931 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,182,316 - 211,195,974 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,115,992 - 221,129,668 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,115,860 - 221,129,654 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,048,955 - 228,062,763 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,385,471 - 208,399,265 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	208,538,923 - 208,552,718 (-)	NCBI
Celera	1	200,581,422 - 200,595,031 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Scyl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,730,224 - 19,742,348 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,730,224 - 19,742,348 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCYL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,754,737 - 66,768,389 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,797,486 - 67,811,129 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,884,136 - 60,897,790 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	64,220,543 - 64,233,415 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	64,218,464 - 64,233,413 (+)	Ensembl	panpan1.1		panPan2

SCYL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,667,647 - 51,680,904 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	51,667,790 - 51,681,090 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,275,880 - 50,289,017 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,704,637 - 52,717,942 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,704,638 - 52,717,923 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,804,532 - 51,817,842 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,378,790 - 51,391,905 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,168,941 - 52,182,256 (-)	NCBI		UU_Cfam_GSD_1.0

Scyl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,475,976 - 7,486,072 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	3,918,469 - 3,928,421 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	3,918,325 - 3,928,415 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCYL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	8,700,828 - 8,714,571 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	8,700,973 - 8,714,763 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	105,998,284 - 106,011,415 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scyl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	20,861,039 - 20,872,090 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	20,861,037 - 20,872,127 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SCYL1
492 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	9	4	3	5	2	23	2	3	3
Below cutoff	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003122558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005660705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01114924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000014194 ⟹ ENSSSCP00000013808

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	6,720,056 - 6,733,438 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065065 ⟹ ENSSSCP00000036717

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	6,716,115 - 6,733,421 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000068154 ⟹ ENSSSCP00000069035

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	6,720,219 - 6,733,444 (-)	Ensembl

RefSeq Acc Id:

XM_003122558 ⟹ XP_003122606

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	6,720,047 - 6,733,477 (-)	NCBI

Sequence:

show sequence

CGCCCCGCCCCGCCCCGGCTCGGGCAGCGGGAGGACCCGGAGCTGAAGCGCCCGAGGCCGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGGGACGATGTGGTTCTTTGCTCGGGACCCGGTCCGGGAT
TTCCCGTTTGAGCTCAGCCCGGAACCTCCCGAGGGCAGCCCGCCCGGACCCTGGGCCCTGCACC
GCGGCCGCAAGAAGGCCACAGGCAGCCCGGTGTCCATCTTCGTCTATGATGTGAAGCCCGGCGC
CGAAGAGCAAACCCAGGTGGCCAAAGCCGCCTTCAAGCGCCTCAAAACTCTCCGGCACCCCAAC
ATCCTGGCCTACATCGATGGGCTGGAGACAGAAAAATGCCTCCACGTGGTGACGGAGGCTGTGA
CCCCGCTGGCAGCGTACCTCAAGGCTCGAACAGAGACTGGTGATCTGAGGGAGATGGAGCTCTC
CTGGGGGCTACACCAAATTGTGAAAGCCCTCAGCTTCCTGGTCAACGACTGCAGCCTCATCCAC
AATAATGTCTGCATGGCCGCTGTGTTCGTGGACCGCGCTGGGGAGTGGAAGCTTGGGGGCCTGG
ACTACATGTATTCGGCGCAGGGCAATGGTGGGGGTCCTCCCCGCAAGGGGGTCCCCGAACTTGA
GCAGTACGATCCCCCAGAGTTGGCCGATGGCAGTGGCAAAGCAGTCAGAGAGAAGTGGTCAGCC
GACATGTGGCGCCTGGGCTGCCTCATCTGGGAAGTCTTCAATGGGCCCCTACCTCGTGCAGCCG
CCCTGCGAAACCCTGGAAAGATCCCCAAATCACTGGTGCCCCATTACTGTGAGCTGGTCGGAGC
CAACCCCAAGGTTCGTCCCAACCCAGCCCGCTTCCTGCAGAACTGCCGGGCGCCTGGAGGCTTC
ATGAACAACCGCTTTGTGGAGACCAACCTCTTCCTGGAAGAGATTCAGATCAAAGAGCCAGCCG
AGAAGCAAAAATTCTTCCAAGAGCTGAGCAAGAGCCTGGACTCGTTCCCGGAGGATTTCTGCCG
GCACAAGGTGCTGCCCCAGCTGCTGACCGCCTTCGAGTTTGGCAACGCGGGGGCCGTTGTCCTC
ACGCCCCTCTTCAAGGTGGGTAAGTTCCTCAGCGCCGAGGAGTATCAGCAGAAGATCGTCCCTG
TCGTGGTCAAGATGTTCTCATCCACCGACCGCGCCATGCGCATCCGCCTCCTGCAGCAGATGGA
GCAGTTCATCCAGTACCTTGATGAGCCAACAGTCAACACCCAGATCTTTCCCCACGTCGTGCAC
GGCTTCCTAGACACCAATCCTGCCATCCGGGAGCAGACAGTCAAGTCCATGCTGCTCCTGGCCC
CGAAGCTGAATGAGGCCAACCTCAATGTGGAGCTGATGAAGCACTTCGCGCGGCTGCAGGCCAA
GGACGAGCAGGGCCCCATCCGCTGCAACACCACCGTCTGCCTGGGCAAGATCGGCTCCTACCTC
AGTGCCAGCACCAGACACAGGGTCCTCACCTCCGCCTTTAGCCGGGCCACTAAGGACCCATTTG
CGCCATCCCGGGTCGCGGGTGTACTGGGCTTCGCTGCCACCCACAACCTCTACTCGATGACCGA
CTGTGCCCACAAGATCCTGCCTGTGCTCTGCGGTCTCACCGTGGATCCTGAGAAATCCGTGCGG
GACCAGGCCTTCAAGGCCATTCGAAGCTTCCTGTCCAAACTGGAGTCTGTGTCAGAGGACCCCA
CCCAGCTGGCGGAAGTGGAGAAGGATGTCCATGCAGCCTCCAGCCCTGGAGTAGGAGGAGCCGC
AGCCAGCTGGGCAGGCTGGGCTGTGACAGGGGTCTCCTCGCTCACCTCTAAGCTGATCCGTGCA
CACCCCACTGCTGCCCCAGCTGAGACCAACGTTCCCCAGAGACCCGTGCCTGAGGGGCTTCCTG
CCCCCACCCCTGCCCCTGCCCCTGCCCCAGCCACGACCTCAGGCCACTGGGAGACACAAGAGGA
GGCCAAGGACACAGAAGAGGACAGCAGTGCTGCTGACAGATGGGATGATGAAGACTGGGGCAGC
TTGGAGCAGGAGGCCGAGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACTGGGGGCCAATCCA
GCCAGCCTGGGCAGACCAGCAACTCTGGCCACAAATCCCCAGAGTCAGACTGGAGCAGTTGGGA
AGCTGAGGGCTCATGGGAGCAGGCTTGGCAGGAGCCAAGCCCCCCAGAGCCGCCCCCTGAGGGC
ACACGACTGGCCAGCGAGTATAACTGGGGTGGACCAGAGCCTAGTGACAAAGGCGACCCCTTTG
CTGCCCTGTCAGCGCGTCGGGAGGCTGCTGCTCAGCCAAGACCCGACTCATGGGGTGATGACAA
CTGGGAGGGCCTGGAGACCGAGAGCCGACAGGCCAAGGCGGAGCTAGCCCGGAAGAAGCGTGAG
GAGCGGCGGAGGGAGATGGAGGCCAAACGCGCAGAGAAAAAGGCGGCCAAGGGCCCCATGAAGC
TGGGGACCCGGAAGCTGGACTGAATCGTGGGTGTGGGCGCTTACCAGCTAGGGAGAGCAGGCCC
CGCAGATGTATTTATTGTACAAACCATGCGAGCCTGGCCTGTGTGGCCAGGCACATCTCACATG
TACATAATCAGAGCCACAATAAATTCTATTTCACACCCCTG

hide sequence

RefSeq Acc Id:

XM_005660705 ⟹ XP_005660762

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	6,720,053 - 6,733,472 (-)	NCBI

Sequence:

show sequence

CGCCCCGCCCCGGCTCGGGCAGCGGGAGGACCCGGAGCTGAAGCGCCCGAGGCCGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGGGACGATGTGGTTCTTTGCTCGGGACCCGGTCCGGGATTTCCC
GTTTGAGCTCAGCCCGGAACCTCCCGAGGGCAGCCCGCCCGGACCCTGGGCCCTGCACCGCGGC
CGCAAGAAGGCCACAGGCAGCCCGGTGTCCATCTTCGTCTATGATGTGAAGCCCGGCGCCGAAG
AGCAAACCCAGGTGGCCAAAGCCGCCTTCAAGCGCCTCAAAACTCTCCGGCACCCCAACATCCT
GGCCTACATCGATGGGCTGGAGACAGAAAAATGCCTCCACGTGGTGACGGAGGCTGTGACCCCG
CTGGCAGCGTACCTCAAGGCTCGAACAGAGACTGGTGATCTGAGGGAGATGGAGCTCTCCTGGG
GGCTACACCAAATTGTGAAAGCCCTCAGCTTCCTGGTCAACGACTGCAGCCTCATCCACAATAA
TGTCTGCATGGCCGCTGTGTTCGTGGACCGCGCTGGGGAGTGGAAGCTTGGGGGCCTGGACTAC
ATGTATTCGGCGCAGGGCAATGGTGGGGGTCCTCCCCGCAAGGGGGTCCCCGAACTTGAGCAGT
ACGATCCCCCAGAGTTGGCCGATGGCAGTGGCAAAGCAGTCAGAGAGAAGTGGTCAGCCGACAT
GTGGCGCCTGGGCTGCCTCATCTGGGAAGTCTTCAATGGGCCCCTACCTCGTGCAGCCGCCCTG
CGAAACCCTGGAAAGATCCCCAAATCACTGGTGCCCCATTACTGTGAGCTGGTCGGAGCCAACC
CCAAGGTTCGTCCCAACCCAGCCCGCTTCCTGCAGAACTGCCGGGCGCCTGGAGGCTTCATGAA
CAACCGCTTTGTGGAGACCAACCTCTTCCTGGAAGAGATTCAGATCAAAGAGCCAGCCGAGAAG
CAAAAATTCTTCCAAGAGCTGAGCAAGAGCCTGGACTCGTTCCCGGAGGATTTCTGCCGGCACA
AGGTGCTGCCCCAGCTGCTGACCGCCTTCGAGTTTGGCAACGCGGGGGCCGTTGTCCTCACGCC
CCTCTTCAAGGTGGGTAAGTTCCTCAGCGCCGAGGAGTATCAGCAGAAGATCGTCCCTGTCGTG
GTCAAGATGTTCTCATCCACCGACCGCGCCATGCGCATCCGCCTCCTGCAGCAGATGGAGCAGT
TCATCCAGTACCTTGATGAGCCAACAGTCAACACCCAGATCTTTCCCCACGTCGTGCACGGCTT
CCTAGACACCAATCCTGCCATCCGGGAGCAGACAGTCAAGTCCATGCTGCTCCTGGCCCCGAAG
CTGAATGAGGCCAACCTCAATGTGGAGCTGATGAAGCACTTCGCGCGGCTGCAGGCCAAGGACG
AGCAGGGCCCCATCCGCTGCAACACCACCGTCTGCCTGGGCAAGATCGGCTCCTACCTCAGTGC
CAGCACCAGACACAGGGTCCTCACCTCCGCCTTTAGCCGGGCCACTAAGGACCCATTTGCGCCA
TCCCGGGTCGCGGGTGTACTGGGCTTCGCTGCCACCCACAACCTCTACTCGATGACCGACTGTG
CCCACAAGATCCTGCCTGTGCTCTGCGGTCTCACCGTGGATCCTGAGAAATCCGTGCGGGACCA
GGCCTTCAAGGCCATTCGAAGCTTCCTGTCCAAACTGGAGTCTGTGTCAGAGGACCCCACCCAG
CTGGCGGAAGTGGAGAAGGATGTCCATGCAGCCTCCAGCCCTGGAGTAGGAGGAGCCGCAGCCA
GCTGGGCAGGCTGGGCTGTGACAGGGGTCTCCTCGCTCACCTCTAAGCTGATCCGTGCACACCC
CACTGCTGCCCCAGCTGAGACCAACGTTCCCCAGAGACCCGTGCCTGAGGCCACGACCTCAGGC
CACTGGGAGACACAAGAGGAGGCCAAGGACACAGAAGAGGACAGCAGTGCTGCTGACAGATGGG
ATGATGAAGACTGGGGCAGCTTGGAGCAGGAGGCCGAGTCTGTGCTGGCCCAGCAGGACGACTG
GAGCACTGGGGGCCAATCCAGCCAGCCTGGGCAGACCAGCAACTCTGGCCACAAATCCCCAGAG
TCAGACTGGAGCAGTTGGGAAGCTGAGGGCTCATGGGAGCAGGCTTGGCAGGAGCCAAGCCCCC
CAGAGCCGCCCCCTGAGGGCACACGACTGGCCAGCGAGTATAACTGGGGTGGACCAGAGCCTAG
TGACAAAGGCGACCCCTTTGCTGCCCTGTCAGCGCGTCGGGAGGCTGCTGCTCAGCCAAGACCC
GACTCATGGGGTGATGACAACTGGGAGGGCCTGGAGACCGAGAGCCGACAGGCCAAGGCGGAGC
TAGCCCGGAAGAAGCGTGAGGAGCGGCGGAGGGAGATGGAGGCCAAACGCGCAGAGAAAAAGGC
GGCCAAGGGCCCCATGAAGCTGGGGACCCGGAAGCTGGACTGAATCGTGGGTGTGGGCGCTTAC
CAGCTAGGGAGAGCAGGCCCCGCAGATGTATTTATTGTACAAACCATGCGAGCCTGGCCTGTGT
GGCCAGGCACATCTCACATGTACATAATCAGAGCCACAATAAATTCTATTTCACA

hide sequence

RefSeq Acc Id:

XM_021082856 ⟹ XP_020938515

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	6,720,053 - 6,733,472 (-)	NCBI

Sequence:

show sequence

CGCCCCGCCCCGGCTCGGGCAGCGGGAGGACCCGGAGCTGAAGCGCCCGAGGCCGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGGGACGATGTGGTTCTTTGCTCGGGACCCGGTCCGGGATTTCCC
GTTTGAGCTCAGCCCGGAACCTCCCGAGGGCAGCCCGCCCGGACCCTGGGCCCTGCACCGCGGC
CGCAAGAAGGCCACAGGCAGCCCGGTGTCCATCTTCGTCTATGATGTGAAGCCCGGCGCCGAAG
AGCAAACCCAGGTGGCCAAAGCCGCCTTCAAGCGCCTCAAAACTCTCCGGCACCCCAACATCCT
GGCCTACATCGATGGGCTGGAGACAGAAAAATGCCTCCACGTGGTGACGGAGGCTGTGACCCCG
CTGGCAGCGTACCTCAAGGCTCGAACAGAGACTGGTGATCTGAGGGAGATGGAGCTCTCCTGGG
GGCTACACCAAATTGTGAAAGCCCTCAGCTTCCTGGTCAACGACTGCAGCCTCATCCACAATAA
TGTCTGCATGGCCGCTGTGTTCGTGGACCGCGCTGGGGAGTGGAAGCTTGGGGGCCTGGACTAC
ATGTATTCGGCGCAGGGCAATGGTGGGGGTCCTCCCCGCAAGGGGGTCCCCGAACTTGAGCAGT
ACGATCCCCCAGAGTTGGCCGATGGCAGTGGCAAAGCAGTCAGAGAGAAGTGGTCAGCCGACAT
GTGGCGCCTGGGCTGCCTCATCTGGGAAGTCTTCAATGGGCCCCTACCTCGTGCAGCCGCCCTG
CGAAACCCTGGAAAGATCCCCAAATCACTGGTGCCCCATTACTGTGAGCTGGTCGGAGCCAACC
CCAAGGTTCGTCCCAACCCAGCCCGCTTCCTGCAGAACTGCCGGGCGCCTGGAGGCTTCATGAA
CAACCGCTTTGTGGAGACCAACCTCTTCCTGGAAGAGATTCAGATCAAAGAGCCAGCCGAGAAG
CAAAAATTCTTCCAAGAGCTGAGCAAGAGCCTGGACTCGTTCCCGGAGGATTTCTGCCGGCACA
AGGTGCTGCCCCAGCTGCTGACCGCCTTCGAGTTTGGCAACGCGGGGGCCGTTGTCCTCACGCC
CCTCTTCAAGGTGGGTAAGTTCCTCAGCGCCGAGGAGTATCAGCAGAAGATCGTCCCTGTCGTG
GTCAAGATGTTCTCATCCACCGACCGCGCCATGCGCATCCGCCTCCTGCAGCAGATGGAGCAGT
TCATCCAGTACCTTGATGAGCCAACAGTCAACACCCAGATCTTTCCCCACGTCGTGCACGGCTT
CCTAGACACCAATCCTGCCATCCGGGAGCAGACAGTCAAGTCCATGCTGCTCCTGGCCCCGAAG
CTGAATGAGGCCAACCTCAATGTGGAGCTGATGAAGCACTTCGCGCGGCTGCAGGCCAAGGACG
AGCAGGGCCCCATCCGCTGCAACACCACCGTCTGCCTGGGCAAGATCGGCTCCTACCTCAGTGC
CAGCACCAGACACAGGGTCCTCACCTCCGCCTTTAGCCGGGCCACTAAGGACCCATTTGCGCCA
TCCCGGGTCGCGGGTGTACTGGGCTTCGCTGCCACCCACAACCTCTACTCGATGACCGACTGTG
CCCACAAGATCCTGCCTGTGCTCTGCGGTCTCACCGTGGATCCTGAGAAATCCGTGCGGGACCA
GGCCTTCAAGGCCATTCGAAGCTTCCTGTCCAAACTGGAGTCTGTGTCAGAGGACCCCACCCAG
CTGGCGGAAGTGGAGAAGGATGTCCATGCAGCCTCCAGCCCTGGAGTAGGAGGAGCCGCAGCCA
GCTGGGCAGGCTGGGCTGTGACAGGGGTCTCCTCGCTCACCTCTAAGCTGATCCGTGCACACCC
CACTGCTGCCCCAGCTGAGACCAACGTTCCCCAGAGACCCGTGCCTGAGGGGCTTCCTGCCCCC
ACCCCTGCCCCTGCCCCTGCCCCAGCCACGACCTCAGGCCACTGGGAGACACAAGAGGAGGCCA
AGGACACAGAAGAGGACAGCAGTGCTGCTGACAGATGGGATGATGAAGACTGGGGCAGCTTGGA
GGAGGCCGAGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACTGGGGGCCAATCCAGCCAGCCT
GGGCAGACCAGCAACTCTGGCCACAAATCCCCAGAGTCAGACTGGAGCAGTTGGGAAGCTGAGG
GCTCATGGGAGCAGGCTTGGCAGGAGCCAAGCCCCCCAGAGCCGCCCCCTGAGGGCACACGACT
GGCCAGCGAGTATAACTGGGGTGGACCAGAGCCTAGTGACAAAGGCGACCCCTTTGCTGCCCTG
TCAGCGCGTCGGGAGGCTGCTGCTCAGCCAAGACCCGACTCATGGGGTGATGACAACTGGGAGG
GCCTGGAGACCGAGAGCCGACAGGCCAAGGCGGAGCTAGCCCGGAAGAAGCGTGAGGAGCGGCG
GAGGGAGATGGAGGCCAAACGCGCAGAGAAAAAGGCGGCCAAGGGCCCCATGAAGCTGGGGACC
CGGAAGCTGGACTGAATCGTGGGTGTGGGCGCTTACCAGCTAGGGAGAGCAGGCCCCGCAGATG
TATTTATTGTACAAACCATGCGAGCCTGGCCTGTGTGGCCAGGCACATCTCACATGTACATAAT
CAGAGCCACAATAAATTCTATTTCACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003122606	(Get FASTA)	NCBI Sequence Viewer
	XP_005660762	(Get FASTA)	NCBI Sequence Viewer
	XP_020938515	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000013808.5
	ENSSSCP00000036717
	ENSSSCP00000036717.1
	ENSSSCP00025047013.1
	ENSSSCP00030011323.1
	ENSSSCP00035033766.1
	ENSSSCP00040036585.1
	ENSSSCP00045040071.1
	ENSSSCP00050009059.1
	ENSSSCP00055029990.1
	ENSSSCP00060037961.1
	ENSSSCP00065022115.1
	ENSSSCP00070032840.1

RefSeq Acc Id:	XP_003122606 ⟸ XM_003122558
- Peptide Label:	isoform X1
- UniProtKB:	A0A286ZZ23 (UniProtKB/TrEMBL), A0A4X1UVQ8 (UniProtKB/TrEMBL), A0A8D1FM22 (UniProtKB/TrEMBL), A0A8D1WE14 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWFFARDPVRDFPFELSPEPPEGSPPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAA FKRLKTLRHPNILAYIDGLETEKCLHVVTEAVTPLAAYLKARTETGDLREMELSWGLHQIVKAL SFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGVPELEQYDPPELADG SGKAVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKSLVPHYCELVGANPKVRPNPAR FLQNCRAPGGFMNNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDSFPEDFCRHKVLPQLLTA FEFGNAGAVVLTPLFKVGKFLSAEEYQQKIVPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPT VNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNT TVCLGKIGSYLSASTRHRVLTSAFSRATKDPFAPSRVAGVLGFAATHNLYSMTDCAHKILPVLC GLTVDPEKSVRDQAFKAIRSFLSKLESVSEDPTQLAEVEKDVHAASSPGVGGAAASWAGWAVTG VSSLTSKLIRAHPTAAPAETNVPQRPVPEGLPAPTPAPAPAPATTSGHWETQEEAKDTEEDSSA ADRWDDEDWGSLEQEAESVLAQQDDWSTGGQSSQPGQTSNSGHKSPESDWSSWEAEGSWEQAWQ EPSPPEPPPEGTRLASEYNWGGPEPSDKGDPFAALSARREAAAQPRPDSWGDDNWEGLETESRQ AKAELARKKREERRREMEAKRAEKKAAKGPMKLGTRKLD hide sequence

RefSeq Acc Id:	XP_005660762 ⟸ XM_005660705
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1LJ31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWFFARDPVRDFPFELSPEPPEGSPPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAA FKRLKTLRHPNILAYIDGLETEKCLHVVTEAVTPLAAYLKARTETGDLREMELSWGLHQIVKAL SFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGVPELEQYDPPELADG SGKAVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKSLVPHYCELVGANPKVRPNPAR FLQNCRAPGGFMNNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDSFPEDFCRHKVLPQLLTA FEFGNAGAVVLTPLFKVGKFLSAEEYQQKIVPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPT VNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNT TVCLGKIGSYLSASTRHRVLTSAFSRATKDPFAPSRVAGVLGFAATHNLYSMTDCAHKILPVLC GLTVDPEKSVRDQAFKAIRSFLSKLESVSEDPTQLAEVEKDVHAASSPGVGGAAASWAGWAVTG VSSLTSKLIRAHPTAAPAETNVPQRPVPEATTSGHWETQEEAKDTEEDSSAADRWDDEDWGSLE QEAESVLAQQDDWSTGGQSSQPGQTSNSGHKSPESDWSSWEAEGSWEQAWQEPSPPEPPPEGTR LASEYNWGGPEPSDKGDPFAALSARREAAAQPRPDSWGDDNWEGLETESRQAKAELARKKREER RREMEAKRAEKKAAKGPMKLGTRKLD hide sequence

RefSeq Acc Id:	XP_020938515 ⟸ XM_021082856
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1FM22 (UniProtKB/TrEMBL), A0A8D1WE14 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWFFARDPVRDFPFELSPEPPEGSPPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAA FKRLKTLRHPNILAYIDGLETEKCLHVVTEAVTPLAAYLKARTETGDLREMELSWGLHQIVKAL SFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGVPELEQYDPPELADG SGKAVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKSLVPHYCELVGANPKVRPNPAR FLQNCRAPGGFMNNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDSFPEDFCRHKVLPQLLTA FEFGNAGAVVLTPLFKVGKFLSAEEYQQKIVPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPT VNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNT TVCLGKIGSYLSASTRHRVLTSAFSRATKDPFAPSRVAGVLGFAATHNLYSMTDCAHKILPVLC GLTVDPEKSVRDQAFKAIRSFLSKLESVSEDPTQLAEVEKDVHAASSPGVGGAAASWAGWAVTG VSSLTSKLIRAHPTAAPAETNVPQRPVPEGLPAPTPAPAPAPATTSGHWETQEEAKDTEEDSSA ADRWDDEDWGSLEEAESVLAQQDDWSTGGQSSQPGQTSNSGHKSPESDWSSWEAEGSWEQAWQE PSPPEPPPEGTRLASEYNWGGPEPSDKGDPFAALSARREAAAQPRPDSWGDDNWEGLETESRQA KAELARKKREERRREMEAKRAEKKAAKGPMKLGTRKLD hide sequence

RefSeq Acc Id:

ENSSSCP00000069035 ⟸ ENSSSCT00000068154

RefSeq Acc Id:

ENSSSCP00000036717 ⟸ ENSSSCT00000065065

RefSeq Acc Id:

ENSSSCP00000013808 ⟸ ENSSSCT00000014194

Protein Domains

Protein kinase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000012984	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025076084	UniProtKB/TrEMBL
	ENSSSCG00030018195	UniProtKB/TrEMBL
	ENSSSCG00035060584	UniProtKB/TrEMBL
	ENSSSCG00040061241	UniProtKB/TrEMBL
	ENSSSCG00045032548	UniProtKB/TrEMBL
	ENSSSCG00050015889	UniProtKB/TrEMBL
	ENSSSCG00055017952	UniProtKB/TrEMBL
	ENSSSCG00060063837	UniProtKB/TrEMBL
	ENSSSCG00065037357	UniProtKB/TrEMBL
	ENSSSCG00070019697	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000014194.5	UniProtKB/TrEMBL
	ENSSSCT00000065065	ENTREZGENE
	ENSSSCT00000065065.2	UniProtKB/TrEMBL
	ENSSSCT00025105285.1	UniProtKB/TrEMBL
	ENSSSCT00030025346.1	UniProtKB/TrEMBL
	ENSSSCT00035081565.1	UniProtKB/TrEMBL
	ENSSSCT00040083966.1	UniProtKB/TrEMBL
	ENSSSCT00045057322.1	UniProtKB/TrEMBL
	ENSSSCT00050021617.1	UniProtKB/TrEMBL
	ENSSSCT00055037730.1	UniProtKB/TrEMBL
	ENSSSCT00060087664.1	UniProtKB/TrEMBL
	ENSSSCT00065051002.1	UniProtKB/TrEMBL
	ENSSSCT00070039219.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/TrEMBL
KEGG Report	ssc:100517698	UniProtKB/TrEMBL
NCBI Gene	SCYL1	ENTREZGENE
PANTHER	N-TERMINAL KINASE-LIKE PROTEIN	UniProtKB/TrEMBL
	SCY1-RELATED S/T PROTEIN KINASE-LIKE	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
	SSF56112	UniProtKB/TrEMBL
UniProt	A0A286ZZ23	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UVQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FM22	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1LJ31	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WE14	ENTREZGENE, UniProtKB/TrEMBL
	F1RRK0_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:100856	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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