NEB (nebulin) - Rat Genome Database
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Gene: NEB (nebulin) Sus scrofa
Analyze
Symbol: NEB
Name: nebulin
RGD ID: 14240383
Description: ENCODES a protein that exhibits actin binding (inferred); ASSOCIATED WITH congenital muscular dystrophy (ortholog); Deglutition Disorders (ortholog); genetic disease (ortholog); FOUND IN contractile fiber (ortholog); myofibril (ortholog); Z disc (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: nebulin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15546,233 - 766,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115546,187 - 766,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215156,931,032 - 157,035,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
contractile fiber  (ISO)
myofibril  (ISO)
Z disc  (IBA,IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
NEB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15546,233 - 766,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115546,187 - 766,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215156,931,032 - 157,035,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2151,485,336 - 151,734,487 (-)EnsemblGRCh38hg38GRCh38
GRCh382151,485,334 - 151,734,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372152,341,853 - 152,591,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,050,099 - 152,299,235 (-)NCBINCBI36hg18NCBI36
Build 342152,167,362 - 152,416,454NCBI
Celera2145,956,131 - 146,206,052 (-)NCBI
Cytogenetic Map2q23.3NCBI
HuRef2144,238,157 - 144,477,212 (-)NCBIHuRef
CHM1_12152,347,743 - 152,596,882 (-)NCBICHM1_1
Neb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,026,652 - 52,228,810 (-)NCBIGRCm39mm39
GRCm38252,136,640 - 52,338,798 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,136,647 - 52,378,474 (-)EnsemblGRCm38mm10GRCm38
MGSCv37251,992,167 - 52,194,318 (-)NCBIGRCm37mm9NCBIm37
MGSCv36251,958,442 - 52,160,807 (-)NCBImm8
Celera253,863,762 - 54,067,950 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Neb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
Rnor_6.0 Ensembl337,658,563 - 37,854,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0337,658,081 - 37,855,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0342,756,006 - 42,955,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,634,963 - 33,833,113 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1333,531,401 - 33,730,104 (-)NCBI
Celera334,757,516 - 34,953,818 (-)NCBICelera
Cytogenetic Map3q12NCBI
Neb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,060,498 - 17,259,558 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,060,303 - 17,259,558 (-)NCBIChiLan1.0ChiLan1.0
NEB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B156,060,919 - 156,275,265 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02B38,796,991 - 39,038,824 (-)NCBIMhudiblu_PPA_v0panPan3
LOC476149
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1952,569,894 - 52,919,792 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11952,720,427 - 52,921,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Neb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493646925,837,577 - 26,040,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,917,675 - 37,142,582 (-)NCBI
Neb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248665,395,080 - 5,610,128 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High 2
Medium 2 2
Low 3 1 12
Below cutoff 6 2 4 7 2 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017854   ⟹   ENSSSCP00000017373
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15546,233 - 766,128 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037316   ⟹   ENSSSCP00000048954
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15672,722 - 766,123 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037387   ⟹   ENSSSCP00000046551
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15670,389 - 766,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043052   ⟹   ENSSSCP00000057830
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15596,710 - 766,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047615   ⟹   ENSSSCP00000049400
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15670,389 - 766,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048646   ⟹   ENSSSCP00000053496
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15670,389 - 766,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056777   ⟹   ENSSSCP00000052873
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15670,325 - 766,131 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059433   ⟹   ENSSSCP00000058531
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15596,710 - 766,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061764   ⟹   ENSSSCP00000051347
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15546,233 - 766,128 (+)Ensembl
RefSeq Acc Id: XM_021075466   ⟹   XP_020931125
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115546,187 - 766,131 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020931125 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020931125   ⟸   XM_021075466
- Sequence:
RefSeq Acc Id: ENSSSCP00000053496   ⟸   ENSSSCT00000048646
RefSeq Acc Id: ENSSSCP00000058531   ⟸   ENSSSCT00000059433
RefSeq Acc Id: ENSSSCP00000017373   ⟸   ENSSSCT00000017854
RefSeq Acc Id: ENSSSCP00000048954   ⟸   ENSSSCT00000037316
RefSeq Acc Id: ENSSSCP00000046551   ⟸   ENSSSCT00000037387
RefSeq Acc Id: ENSSSCP00000051347   ⟸   ENSSSCT00000061764
RefSeq Acc Id: ENSSSCP00000052873   ⟸   ENSSSCT00000056777
RefSeq Acc Id: ENSSSCP00000049400   ⟸   ENSSSCT00000047615
RefSeq Acc Id: ENSSSCP00000057830   ⟸   ENSSSCT00000043052
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016397 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017373 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000046551 UniProtKB/TrEMBL
  ENSSSCP00000048954 UniProtKB/TrEMBL
  ENSSSCP00000049400 UniProtKB/TrEMBL
  ENSSSCP00000051347 UniProtKB/TrEMBL
  ENSSSCP00000052873 UniProtKB/TrEMBL
  ENSSSCP00000053496 UniProtKB/TrEMBL
  ENSSSCP00000057830 UniProtKB/TrEMBL
  ENSSSCP00000058531 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017854 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037316 UniProtKB/TrEMBL
  ENSSSCT00000037387 UniProtKB/TrEMBL
  ENSSSCT00000043052 UniProtKB/TrEMBL
  ENSSSCT00000047615 UniProtKB/TrEMBL
  ENSSSCT00000048646 UniProtKB/TrEMBL
  ENSSSCT00000056777 UniProtKB/TrEMBL
  ENSSSCT00000059433 UniProtKB/TrEMBL
  ENSSSCT00000061764 UniProtKB/TrEMBL
InterPro Nebulin-like UniProtKB/TrEMBL
  Nebulin_repeat UniProtKB/TrEMBL
  Nebulin_SH3 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene NEB ENTREZGENE
Pfam Nebulin UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS NEBULIN UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
PROSITE NEBULIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART NEBU UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A287ARH5_PIG UniProtKB/TrEMBL
  A0A287AYJ9_PIG UniProtKB/TrEMBL
  A0A287AZK6_PIG UniProtKB/TrEMBL
  A0A287B5G8_PIG UniProtKB/TrEMBL
  A0A287B9W0_PIG UniProtKB/TrEMBL
  A0A287BBK6_PIG UniProtKB/TrEMBL
  A0A287BN18_PIG UniProtKB/TrEMBL
  A0A287BPU2_PIG UniProtKB/TrEMBL
  F1SHX0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96437 ENTREZGENE