ABCG1 (ATP binding cassette subfamily G member 1) - Rat Genome Database

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Gene: ABCG1 (ATP binding cassette subfamily G member 1) Sus scrofa
Analyze
Symbol: ABCG1
Name: ATP binding cassette subfamily G member 1
RGD ID: 14240011
Description: ENCODES a protein that exhibits floppase activity (ortholog); INVOLVED IN cellular response to high density lipoprotein particle stimulus (ortholog); cholesterol transport (ortholog); high-density lipoprotein particle remodeling (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); end stage renal disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog); recycling endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP-binding cassette sub-family G member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,561,951 - 205,628,425 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113205,561,897 - 205,628,428 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213215,898,408 - 215,965,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
ABCG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,561,951 - 205,628,425 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113205,561,897 - 205,628,428 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213215,898,408 - 215,965,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2142,199,689 - 42,297,244 (+)EnsemblGRCh38hg38GRCh38
GRCh382142,199,689 - 42,304,387 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372143,619,799 - 43,717,354 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362142,492,868 - 42,590,423 (+)NCBINCBI36hg18NCBI36
Build 342142,549,262 - 42,590,421NCBI
Celera2128,767,307 - 28,866,320 (+)NCBI
Cytogenetic Map21q22.3NCBI
HuRef2129,038,262 - 29,134,637 (+)NCBIHuRef
CHM1_12143,180,637 - 43,277,563 (+)NCBICHM1_1
Abcg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,276,668 - 31,336,958 (+)NCBIGRCm39mm39
GRCm39 Ensembl1731,276,649 - 31,336,962 (+)Ensembl
GRCm381731,057,694 - 31,117,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,057,675 - 31,117,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,194,639 - 31,254,929 (+)NCBIGRCm37mm9NCBIm37
MGSCv361730,777,799 - 30,842,789 (+)NCBImm8
Celera1731,974,265 - 32,035,260 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
Abcg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2209,126,687 - 9,182,948 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl209,126,687 - 9,182,948 (+)Ensembl
Rnor_6.0209,743,269 - 9,842,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl209,743,269 - 9,840,489 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02011,922,393 - 12,022,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,390,485 - 9,459,574 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1209,390,711 - 9,459,801 (+)NCBI
Celera2010,652,719 - 10,708,365 (+)NCBICelera
Cytogenetic Map20p12NCBI
Abcg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,410,262 - 39,459,383 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,410,262 - 39,459,383 (-)NCBIChiLan1.0ChiLan1.0
ABCG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12141,856,585 - 41,941,031 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2141,839,115 - 41,933,050 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02128,534,697 - 28,619,590 (+)NCBIMhudiblu_PPA_v0panPan3
ABCG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13136,574,406 - 36,627,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3136,553,380 - 36,620,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3135,705,119 - 35,775,022 (+)NCBI
ROS_Cfam_1.03136,070,404 - 36,140,582 (+)NCBI
UMICH_Zoey_3.13135,963,992 - 36,033,708 (+)NCBI
UNSW_CanFamBas_1.03135,943,824 - 36,013,708 (+)NCBI
UU_Cfam_GSD_1.03136,438,763 - 36,508,785 (+)NCBI
Abcg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497135,789,248 - 35,844,939 (+)NCBI
SpeTri2.0NW_0049365001,620,763 - 1,678,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,098,818 - 86,176,101 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl286,099,414 - 86,179,949 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605413,960,459 - 14,143,791 (+)NCBIVero_WHO_p1.0
Abcg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474528,137,140 - 28,188,670 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 2 3 4 1 22 3 3
Below cutoff 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028391   ⟹   ENSSSCP00000028065
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13205,562,711 - 205,628,425 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055448   ⟹   ENSSSCP00000053363
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13205,561,951 - 205,628,422 (+)Ensembl
RefSeq Acc Id: XM_021071021   ⟹   XP_020926680
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113205,561,897 - 205,628,428 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020926680 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020926680   ⟸   XM_021071021
- Sequence:
RefSeq Acc Id: ENSSSCP00000053363   ⟸   ENSSSCT00000055448
RefSeq Acc Id: ENSSSCP00000028065   ⟸   ENSSSCT00000028391
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070009118 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000028065 UniProtKB/TrEMBL
  ENSSSCP00000053363 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070014739 UniProtKB/TrEMBL
  ENSSSCP00070014745 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028391 UniProtKB/TrEMBL
  ENSSSCT00000055448 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070017769 UniProtKB/TrEMBL
  ENSSSCT00070017775 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_2_trans UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABCG1 UniProtKB/TrEMBL
  ABCG_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Pigment_permease/Abcg UniProtKB/TrEMBL
NCBI Gene ABCG1 ENTREZGENE
PANTHER PTHR48041:SF90 UniProtKB/TrEMBL
Pfam ABC2_membrane UniProtKB/TrEMBL
  ABC2_membrane_7 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs 3a01204 UniProtKB/TrEMBL
UniProt A0A287BB75_PIG UniProtKB/TrEMBL
  A0A4X1TG43_PIG UniProtKB/TrEMBL
  A0A4X1THU8_PIG UniProtKB/TrEMBL
  I3LVB3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:97858 ENTREZGENE