SRSF11 (serine and arginine rich splicing factor 11) - Rat Genome Database

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Gene: SRSF11 (serine and arginine rich splicing factor 11) Sus scrofa
Analyze
Symbol: SRSF11
Name: serine and arginine rich splicing factor 11
RGD ID: 14239071
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); nuclear speck (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: serine/arginine-rich splicing factor 11; splicing factor, arginine/serine-rich 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6142,621,924 - 142,642,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16142,621,904 - 142,668,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26132,193,667 - 132,240,416 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
RNA splicing  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:16978188   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SRSF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6142,621,924 - 142,642,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16142,621,904 - 142,668,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26132,193,667 - 132,240,416 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRSF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38170,205,696 - 70,253,052 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl170,205,682 - 70,253,052 (+)EnsemblGRCh38hg38GRCh38
GRCh37170,671,379 - 70,718,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36170,443,953 - 70,490,272 (+)NCBINCBI36Build 36hg18NCBI36
Build 34170,383,385 - 70,429,705NCBI
Celera168,961,312 - 69,007,634 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef168,782,549 - 68,828,871 (+)NCBIHuRef
CHM1_1170,786,765 - 70,833,100 (+)NCBICHM1_1
T2T-CHM13v2.0170,084,212 - 70,131,570 (+)NCBIT2T-CHM13v2.0
Srsf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393157,716,552 - 157,742,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3157,716,110 - 157,742,276 (-)EnsemblGRCm39 Ensembl
GRCm383158,010,915 - 158,036,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3158,010,473 - 158,036,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv373157,673,457 - 157,699,603 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363157,945,937 - 157,958,504 (-)NCBIMGSCv36mm8
Celera3164,477,852 - 164,503,994 (-)NCBICelera
Cytogenetic Map3H4NCBI
cM Map381.63NCBI
Srsf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82249,733,464 - 249,760,296 (-)NCBIGRCr8
mRatBN7.22247,074,623 - 247,101,460 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2247,074,631 - 247,101,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2254,807,001 - 254,833,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02252,700,498 - 252,727,286 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02247,669,178 - 247,695,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02264,837,463 - 264,864,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,837,472 - 264,864,265 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02283,477,393 - 283,504,112 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42256,154,645 - 256,175,169 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2238,874,964 - 238,894,383 (-)NCBICelera
Cytogenetic Map2q45NCBI
Srsf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542321,669,471 - 21,706,327 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542321,669,925 - 21,706,260 (-)NCBIChiLan1.0ChiLan1.0
SRSF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21156,621,871 - 156,668,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11155,780,985 - 155,827,282 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0169,441,043 - 69,488,427 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1171,426,668 - 71,472,580 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,442,600 - 71,471,361 (+)Ensemblpanpan1.1panPan2
SRSF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1675,473,794 - 75,495,860 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl675,464,957 - 75,492,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha678,087,040 - 78,115,284 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0676,066,201 - 76,094,670 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl676,066,748 - 76,108,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1675,619,024 - 75,647,269 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0675,514,315 - 75,542,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0676,015,682 - 76,043,946 (-)NCBIUU_Cfam_GSD_1.0
Srsf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505882,663,665 - 82,699,146 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365911,789,366 - 1,816,342 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365911,789,358 - 1,825,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRSF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12062,885,980 - 62,932,394 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2062,883,026 - 62,916,436 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603354,689,579 - 54,736,573 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srsf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474225,761,410 - 25,789,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474225,761,410 - 25,787,195 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SRSF11
911 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000004195   ⟹   ENSSSCP00000004101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6142,621,924 - 142,642,073 (-)Ensembl
RefSeq Acc Id: NM_001044587   ⟹   NP_001038052
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16142,621,904 - 142,668,107 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001038052   ⟸   NM_001044587
- UniProtKB: Q19QT0 (UniProtKB/TrEMBL),   A0A4X1UC60 (UniProtKB/TrEMBL),   A0A8D0I8V3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004101   ⟸   ENSSSCT00000004195
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003791 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005011522 UniProtKB/TrEMBL
  ENSSSCG00015006481 UniProtKB/TrEMBL
  ENSSSCG00025064469 UniProtKB/TrEMBL
  ENSSSCG00030058187 UniProtKB/TrEMBL
  ENSSSCG00035073884 UniProtKB/TrEMBL
  ENSSSCG00040068872 UniProtKB/TrEMBL
  ENSSSCG00045007528 UniProtKB/TrEMBL
  ENSSSCG00050021772 UniProtKB/TrEMBL
  ENSSSCG00055003166 UniProtKB/TrEMBL
  ENSSSCG00060002741 UniProtKB/TrEMBL
  ENSSSCG00065026027 UniProtKB/TrEMBL
  ENSSSCG00070015506 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004195.3 UniProtKB/TrEMBL
  ENSSSCT00005017894.1 UniProtKB/TrEMBL
  ENSSSCT00015008658.1 UniProtKB/TrEMBL
  ENSSSCT00025088483.1 UniProtKB/TrEMBL
  ENSSSCT00025088688.1 UniProtKB/TrEMBL
  ENSSSCT00025088875.1 UniProtKB/TrEMBL
  ENSSSCT00025089137.1 UniProtKB/TrEMBL
  ENSSSCT00030081204.1 UniProtKB/TrEMBL
  ENSSSCT00030081235.1 UniProtKB/TrEMBL
  ENSSSCT00030081288.1 UniProtKB/TrEMBL
  ENSSSCT00030081324.1 UniProtKB/TrEMBL
  ENSSSCT00035100228.1 UniProtKB/TrEMBL
  ENSSSCT00035100241.1 UniProtKB/TrEMBL
  ENSSSCT00035100288.1 UniProtKB/TrEMBL
  ENSSSCT00035100323.1 UniProtKB/TrEMBL
  ENSSSCT00040094382.1 UniProtKB/TrEMBL
  ENSSSCT00045012565.1 UniProtKB/TrEMBL
  ENSSSCT00045012620.1 UniProtKB/TrEMBL
  ENSSSCT00045012689.1 UniProtKB/TrEMBL
  ENSSSCT00045012763.1 UniProtKB/TrEMBL
  ENSSSCT00050029371.1 UniProtKB/TrEMBL
  ENSSSCT00055006155.1 UniProtKB/TrEMBL
  ENSSSCT00055006169.1 UniProtKB/TrEMBL
  ENSSSCT00055006201.1 UniProtKB/TrEMBL
  ENSSSCT00055006221.1 UniProtKB/TrEMBL
  ENSSSCT00060003373.1 UniProtKB/TrEMBL
  ENSSSCT00060003378.1 UniProtKB/TrEMBL
  ENSSSCT00060003387.1 UniProtKB/TrEMBL
  ENSSSCT00060003389.1 UniProtKB/TrEMBL
  ENSSSCT00065034940.1 UniProtKB/TrEMBL
  ENSSSCT00065034947.1 UniProtKB/TrEMBL
  ENSSSCT00065034963.1 UniProtKB/TrEMBL
  ENSSSCT00065034972.1 UniProtKB/TrEMBL
  ENSSSCT00070030430.1 UniProtKB/TrEMBL
  ENSSSCT00070030436.1 UniProtKB/TrEMBL
  ENSSSCT00070030486.1 UniProtKB/TrEMBL
  ENSSSCT00070030546.1 UniProtKB/TrEMBL
  ENSSSCT00070030563.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SRSF11 UniProtKB/TrEMBL
KEGG Report ssc:733656 UniProtKB/TrEMBL
NCBI Gene SRSF11 ENTREZGENE
PANTHER PTHR32343:SF6 UniProtKB/TrEMBL
  SERINE/ARGININE-RICH SPLICING FACTOR UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A4X1U917_PIG UniProtKB/TrEMBL
  A0A4X1UB68_PIG UniProtKB/TrEMBL
  A0A4X1UBM7_PIG UniProtKB/TrEMBL
  A0A4X1UC60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I8V3 ENTREZGENE, UniProtKB/TrEMBL
  F6Q230_PIG UniProtKB/TrEMBL
  Q19QT0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93473 ENTREZGENE