IHO1 (interactor of HORMAD1 1) - Rat Genome Database
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Gene: IHO1 (interactor of HORMAD1 1) Sus scrofa
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Symbol: IHO1
Name: interactor of HORMAD1 1
RGD ID: 14234559
Description: INVOLVED IN homologous chromosome pairing at meiosis (ortholog); meiotic DNA double-strand break formation (ortholog); oogenesis (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN condensed nuclear chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CCDC36; coiled-coil domain containing 36; interactor of HORMAD1 protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,775,668 - 31,836,911 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,802,963 - 31,836,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,060,241 - 35,067,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
IHO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,775,668 - 31,836,911 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,802,963 - 31,836,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,060,241 - 35,067,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IHO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,198,428 - 49,258,106 (+)EnsemblGRCh38hg38GRCh38
GRCh38349,198,428 - 49,258,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,235,861 - 49,295,539 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37349,235,861 - 49,295,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,210,865 - 49,270,160 (+)NCBINCBI36hg18NCBI36
Celera349,193,717 - 49,258,916 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,293,567 - 49,352,860 (+)NCBIHuRef
CHM1_1349,188,591 - 49,248,327 (+)NCBICHM1_1
Iho1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,280,691 - 108,309,040 (-)NCBIGRCm39mm39
GRCm389108,403,492 - 108,431,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,403,611 - 108,428,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,305,952 - 108,330,813 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,261,591 - 108,294,188 (-)NCBImm8
Celera9108,012,831 - 108,037,747 (-)NCBICelera
Cytogenetic Map9F2NCBI
Iho1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,091,134 - 109,126,386 (-)NCBI
Rnor_6.0 Ensembl8117,183,343 - 117,211,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,182,484 - 117,215,390 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,531,078 - 116,559,700 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,394,590 - 108,425,677 (-)NCBICelera
Cytogenetic Map8q32NCBI
Iho1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555321,198,316 - 1,226,875 (+)NCBIChiLan1.0ChiLan1.0
IHO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,217,333 - 50,260,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,239,250 - 50,259,890 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,122,120 - 49,181,228 (+)NCBIMhudiblu_PPA_v0panPan3
IHO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,965,480 - 39,990,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,964,629 - 40,006,726 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Iho1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529905,692 - 929,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IHO1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,593,516 - 10,653,519 (+)NCBI
Iho1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,208,648 - 3,249,281 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1 1
Low 9 4 2 4 2 22 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012454   ⟹   ENSSSCP00000012129
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,775,668 - 31,836,911 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000012457   ⟹   ENSSSCP00000012132
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,775,668 - 31,830,912 (+)Ensembl
RefSeq Acc Id: XM_005669538   ⟹   XP_005669595
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,802,963 - 31,836,911 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005669595 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005669595   ⟸   XM_005669538
- Sequence:
RefSeq Acc Id: ENSSSCP00000012129   ⟸   ENSSSCT00000012454
RefSeq Acc Id: ENSSSCP00000012132   ⟸   ENSSSCT00000012457


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012129 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012454 ENTREZGENE, UniProtKB/TrEMBL
InterPro IHO1 UniProtKB/TrEMBL
NCBI Gene CCDC36 ENTREZGENE
PANTHER PTHR35662 UniProtKB/TrEMBL
Pfam IHO1 UniProtKB/TrEMBL
UniProt F1SKI1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86295 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-11 IHO1  interactor of HORMAD1 1  CCDC36  coiled-coil domain containing 36  Symbol and/or name change 19259463 PROVISIONAL