TALDO1 (transaldolase 1) - Rat Genome Database

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Gene: TALDO1 (transaldolase 1) Sus scrofa
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Symbol: TALDO1
Name: transaldolase 1
RGD ID: 14233467
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); identical protein binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN fructose 6-phosphate metabolic process (ortholog); glyceraldehyde-3-phosphate metabolic process (ortholog); pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH carbohydrate metabolic disorder (ortholog); cataract (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: transaldolase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2464,728 - 472,835 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12464,781 - 472,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22201,532 - 227,228 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
TALDO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2464,728 - 472,835 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12464,781 - 472,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22201,532 - 227,228 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TALDO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811747,464 - 765,012 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11747,415 - 765,012 (+)EnsemblGRCh38hg38GRCh38
GRCh3711747,464 - 765,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611737,432 - 755,024 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411737,431 - 755,023NCBI
Celera11815,308 - 828,130 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef11564,412 - 581,950 (+)NCBIHuRef
CHM1_111746,369 - 763,851 (+)NCBICHM1_1
T2T-CHM13v2.011798,942 - 816,524 (+)NCBIT2T-CHM13v2.0
Taldo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,972,073 - 140,982,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,972,112 - 140,982,881 (+)EnsemblGRCm39 Ensembl
GRCm387141,392,160 - 141,402,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,392,199 - 141,402,968 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,578,059 - 148,588,875 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367141,243,531 - 141,254,288 (+)NCBIMGSCv36mm8
Celera7141,185,913 - 141,196,721 (+)NCBICelera
Cytogenetic Map7F5NCBI
Taldo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21196,493,634 - 196,503,965 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1196,493,589 - 196,503,974 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,839,159 - 204,849,489 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01211,967,918 - 211,978,015 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01204,642,055 - 204,652,153 (+)NCBIRnor_WKY
Rnor_6.01214,375,555 - 214,385,886 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,375,515 - 214,385,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,292,669 - 221,302,999 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,582,856 - 201,593,187 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,737,566 - 201,747,896 (+)NCBI
Celera1194,127,362 - 194,137,466 (+)NCBICelera
Cytogenetic Map1q41NCBI
Taldo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,356,603 - 11,364,259 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,356,601 - 11,364,573 (-)NCBIChiLan1.0ChiLan1.0
TALDO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111809,751 - 826,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11809,751 - 826,744 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011764,864 - 782,548 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TALDO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,764,138 - 25,772,043 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,436,609 - 25,444,516 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,372,292 - 26,380,192 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,372,286 - 26,380,960 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,881,807 - 25,889,713 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,526,824 - 25,534,713 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01826,139,191 - 26,147,099 (+)NCBIUU_Cfam_GSD_1.0
Taldo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947530,997 - 540,150 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936888531,002 - 540,194 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TALDO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11553,475 - 569,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1553,458 - 573,546 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603897,616,675 - 97,643,928 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taldo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476621,758,821 - 21,766,027 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476621,758,821 - 21,766,052 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 5 4 1 2 3
Low 2 2 3 2 19 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014042   ⟹   ENSSSCP00000013657
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2464,728 - 472,835 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048028   ⟹   ENSSSCP00000058258
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2464,728 - 472,744 (+)Ensembl
RefSeq Acc Id: NM_001244935   ⟹   NP_001231864
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12464,781 - 472,836 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231864 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein Q29593 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001231864   ⟸   NM_001244935
- Sequence:
RefSeq Acc Id: ENSSSCP00000013657   ⟸   ENSSSCT00000014042
RefSeq Acc Id: ENSSSCP00000058258   ⟸   ENSSSCT00000048028


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012847 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025013424 UniProtKB/TrEMBL
  ENSSSCG00030034824 UniProtKB/TrEMBL
  ENSSSCG00035068177 UniProtKB/TrEMBL
  ENSSSCG00040034901 UniProtKB/TrEMBL
  ENSSSCG00045013334 UniProtKB/TrEMBL
  ENSSSCG00050034181 UniProtKB/TrEMBL
  ENSSSCG00055003013 UniProtKB/TrEMBL
  ENSSSCG00060040459 UniProtKB/TrEMBL
  ENSSSCG00065035827 UniProtKB/TrEMBL
  ENSSSCG00065036051 UniProtKB/TrEMBL
  ENSSSCG00070027509 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013657 ENTREZGENE
  ENSSSCP00000013657.3 UniProtKB/Swiss-Prot
  ENSSSCP00000058258.1 UniProtKB/TrEMBL
  ENSSSCP00025007111.1 UniProtKB/TrEMBL
  ENSSSCP00025007145.1 UniProtKB/TrEMBL
  ENSSSCP00030021775.1 UniProtKB/TrEMBL
  ENSSSCP00030021797.1 UniProtKB/TrEMBL
  ENSSSCP00035038576.1 UniProtKB/TrEMBL
  ENSSSCP00035038590.1 UniProtKB/TrEMBL
  ENSSSCP00040019748.1 UniProtKB/TrEMBL
  ENSSSCP00045015689.1 UniProtKB/TrEMBL
  ENSSSCP00045015722.1 UniProtKB/TrEMBL
  ENSSSCP00050018833.1 UniProtKB/TrEMBL
  ENSSSCP00050018837.1 UniProtKB/TrEMBL
  ENSSSCP00055004593.1 UniProtKB/TrEMBL
  ENSSSCP00060023391.1 UniProtKB/TrEMBL
  ENSSSCP00065021092.1 UniProtKB/TrEMBL
  ENSSSCP00065021262.1 UniProtKB/TrEMBL
  ENSSSCP00065021267.1 UniProtKB/TrEMBL
  ENSSSCP00070046808.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014042 ENTREZGENE
  ENSSSCT00000014042.4 UniProtKB/Swiss-Prot
  ENSSSCT00000048028.2 UniProtKB/TrEMBL
  ENSSSCT00025017788.1 UniProtKB/TrEMBL
  ENSSSCT00025017848.1 UniProtKB/TrEMBL
  ENSSSCT00030048223.1 UniProtKB/TrEMBL
  ENSSSCT00030048259.1 UniProtKB/TrEMBL
  ENSSSCT00035091994.1 UniProtKB/TrEMBL
  ENSSSCT00035092018.1 UniProtKB/TrEMBL
  ENSSSCT00040047156.1 UniProtKB/TrEMBL
  ENSSSCT00045022741.1 UniProtKB/TrEMBL
  ENSSSCT00045022789.1 UniProtKB/TrEMBL
  ENSSSCT00050045826.1 UniProtKB/TrEMBL
  ENSSSCT00050045837.1 UniProtKB/TrEMBL
  ENSSSCT00055005880.1 UniProtKB/TrEMBL
  ENSSSCT00060054831.1 UniProtKB/TrEMBL
  ENSSSCT00065048815.1 UniProtKB/TrEMBL
  ENSSSCT00065049150.1 UniProtKB/TrEMBL
  ENSSSCT00065049158.1 UniProtKB/TrEMBL
  ENSSSCT00070055159.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAL/FSA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transaldolase_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transaldolase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene TALDO1 ENTREZGENE
PANTHER PTHR10683 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10683:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TAL_FSA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TRANSALDOLASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSALDOLASE_2 UniProtKB/TrEMBL
TIGRFAMs talAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287BQ72_PIG UniProtKB/TrEMBL
  A0A4X1VXM7_PIG UniProtKB/TrEMBL
  A0A8D0QVN8_PIG UniProtKB/TrEMBL
  A0A8D0WJT9_PIG UniProtKB/TrEMBL
  A0A8D1YIK9_PIG UniProtKB/TrEMBL
  Q29593 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary F1RYY6 UniProtKB/Swiss-Prot
VGNC ID VGNC:100870 ENTREZGENE