RPL23 (ribosomal protein L23) - Rat Genome Database

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Gene: RPL23 (ribosomal protein L23) Sus scrofa
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Symbol: RPL23
Name: ribosomal protein L23
RGD ID: 14233196
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); transcription coactivator binding (inferred); ubiquitin ligase inhibitor activity (inferred); INVOLVED IN G1 to G0 transition (ortholog); regulation of G1 to G0 transition (ortholog); PARTICIPATES IN p53 signaling pathway; ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; large ribosomal subunit; cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L23; large ribosomal subunit protein uL14; ribosomal protein L17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,279,965 - 23,285,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,279,965 - 23,285,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8672129   PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:24930395   PMID:30032202  


Genomics

Comparative Map Data
RPL23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,279,965 - 23,285,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,279,965 - 23,285,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,847,860 - 38,853,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,847,860 - 38,853,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371737,004,113 - 37,009,974 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,259,847 - 34,263,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341734,259,864 - 34,263,515NCBI
Celera1733,667,292 - 33,671,022 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,801,469 - 32,805,199 (-)NCBIHuRef
CHM1_11737,241,607 - 37,245,337 (-)NCBICHM1_1
T2T-CHM13v2.01739,710,917 - 39,716,772 (-)NCBIT2T-CHM13v2.0
Rpl23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,668,352 - 97,673,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,668,353 - 97,673,263 (-)EnsemblGRCm39 Ensembl
GRCm381197,777,526 - 97,782,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,777,527 - 97,782,437 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,638,840 - 97,643,753 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,593,633 - 97,598,463 (-)NCBIMGSCv36mm8
Celera11107,427,049 - 107,431,962 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.1NCBI
Rpl23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,268,223 - 83,272,184 (-)NCBIGRCr8
mRatBN7.21082,771,878 - 82,775,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,720,146 - 87,724,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,218,235 - 87,222,193 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,610,820 - 82,614,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,721,398 - 85,725,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,721,394 - 85,725,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,510,909 - 85,514,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,527,589 - 86,531,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,527,282 - 81,531,200 (-)NCBICelera
Cytogenetic Map10q31NCBI
Rpl23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,892,880 - 13,898,079 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,892,880 - 13,898,079 (-)NCBIChiLan1.0ChiLan1.0
RPL23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,094,678 - 26,098,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,978,254 - 27,982,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,417,964 - 18,421,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,690,682 - 18,694,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,690,682 - 18,698,253 (+)Ensemblpanpan1.1panPan2
RPL23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,397,143 - 23,403,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,262,282 - 23,403,054 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,868,978 - 22,874,894 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,191,986 - 24,197,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,056,665 - 24,197,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,963,922 - 22,970,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,224,986 - 23,230,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,350,498 - 23,356,591 (+)NCBIUU_Cfam_GSD_1.0
Rpl23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,829,881 - 22,834,504 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,240,638 - 14,245,194 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,240,635 - 14,245,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,341,370 - 67,345,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607738,335,135 - 38,338,860 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,874,977 - 3,883,068 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,875,181 - 3,880,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL23
118 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000051843   ⟹   ENSSSCP00000039109
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,279,965 - 23,285,515 (+)Ensembl
RefSeq Acc Id: NM_001129955   ⟹   NP_001123427
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11223,279,965 - 23,285,538 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001123427   ⟸   NM_001129955
- UniProtKB: A1XQU4 (UniProtKB/Swiss-Prot),   P62831 (UniProtKB/Swiss-Prot),   A0A8D0SG73 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000039109   ⟸   ENSSSCT00000051843


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038880 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005021234 UniProtKB/Swiss-Prot
  ENSSSCG00015034602 UniProtKB/Swiss-Prot
  ENSSSCG00025048282 UniProtKB/TrEMBL
  ENSSSCG00030055317 UniProtKB/Swiss-Prot
  ENSSSCG00035002443 UniProtKB/Swiss-Prot
  ENSSSCG00035019140 UniProtKB/Swiss-Prot
  ENSSSCG00040040092 UniProtKB/Swiss-Prot
  ENSSSCG00045026297 UniProtKB/Swiss-Prot
  ENSSSCG00050059140 UniProtKB/Swiss-Prot
  ENSSSCG00055004278 UniProtKB/Swiss-Prot
  ENSSSCG00060054872 UniProtKB/TrEMBL
  ENSSSCG00065040079 UniProtKB/Swiss-Prot
  ENSSSCG00070017546 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051843 ENTREZGENE
  ENSSSCT00000051843.3 UniProtKB/Swiss-Prot
  ENSSSCT00005033514.1 UniProtKB/Swiss-Prot
  ENSSSCT00005033535.1 UniProtKB/Swiss-Prot
  ENSSSCT00005033558.1 UniProtKB/Swiss-Prot
  ENSSSCT00005033587.1 UniProtKB/Swiss-Prot
  ENSSSCT00005033630.1 UniProtKB/Swiss-Prot
  ENSSSCT00015046494.1 UniProtKB/Swiss-Prot
  ENSSSCT00025065886.1 UniProtKB/TrEMBL
  ENSSSCT00030077118.1 UniProtKB/Swiss-Prot
  ENSSSCT00030077140.1 UniProtKB/Swiss-Prot
  ENSSSCT00035003058.1 UniProtKB/Swiss-Prot
  ENSSSCT00035024755.1 UniProtKB/Swiss-Prot
  ENSSSCT00040053952.1 UniProtKB/Swiss-Prot
  ENSSSCT00045044853.1 UniProtKB/Swiss-Prot
  ENSSSCT00050080584.1 UniProtKB/Swiss-Prot
  ENSSSCT00055008467.1 UniProtKB/Swiss-Prot
  ENSSSCT00060074750.1 UniProtKB/TrEMBL
  ENSSSCT00065054815.1 UniProtKB/Swiss-Prot
  ENSSSCT00070034631.1 UniProtKB/TrEMBL
  ENSSSCT00070034645.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.150.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L14_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L14P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L14P_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:414398 UniProtKB/Swiss-Prot
NCBI Gene RPL23 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11761 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ribosomal_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1ULC0_PIG UniProtKB/TrEMBL
  A0A8D0SG73 ENTREZGENE, UniProtKB/TrEMBL
  A1XQU4 ENTREZGENE
  P62831 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A1XQU4 UniProtKB/Swiss-Prot
  P23131 UniProtKB/Swiss-Prot
  P24048 UniProtKB/Swiss-Prot
  Q29246 UniProtKB/Swiss-Prot