POLR3A (RNA polymerase III subunit A) - Rat Genome Database
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Gene: POLR3A (RNA polymerase III subunit A) Sus scrofa
Analyze
Symbol: POLR3A
Name: RNA polymerase III subunit A
RGD ID: 14233062
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN innate immune response (inferred); positive regulation of interferon-beta production (inferred); transcription, DNA-templated (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 3 (ortholog); Dysmyelinating Leukodystrophy with Oligodontia (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA-directed RNA polymerase III subunit RPC1; polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1480,410,147 - 80,471,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11480,410,143 - 80,471,740 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21486,944,625 - 87,003,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
POLR3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1480,410,147 - 80,471,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11480,410,143 - 80,471,740 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21486,944,625 - 87,003,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1077,969,251 - 78,029,515 (-)EnsemblGRCh38hg38GRCh38
GRCh381077,975,149 - 78,029,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371079,734,907 - 79,789,273 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371079,734,907 - 79,789,298 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361079,405,900 - 79,459,265 (-)NCBINCBI36hg18NCBI36
Build 341079,405,911 - 79,459,265NCBI
Celera1073,021,499 - 73,075,893 (-)NCBI
Cytogenetic Map10q22.3NCBI
HuRef1073,729,855 - 73,784,226 (-)NCBIHuRef
CHM1_11080,017,697 - 80,072,040 (-)NCBICHM1_1
Polr3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391424,498,762 - 24,537,126 (-)NCBIGRCm39mm39
GRCm381424,448,694 - 24,487,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1424,448,696 - 24,487,058 (-)EnsemblGRCm38mm10GRCm38
MGSCv371425,267,916 - 25,306,268 (-)NCBIGRCm37mm9NCBIm37
MGSCv361423,281,159 - 23,319,511 (-)NCBImm8
Celera1420,823,678 - 20,861,770 (-)NCBICelera
Cytogenetic Map14A3NCBI
Polr3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21649,178 - 88,178 (-)NCBI
Rnor_6.0 Ensembl16716,683 - 755,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.016717,821 - 756,002 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.016712,735 - 750,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4164,090 - 42,301 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1164,027 - 40,227 (-)NCBI
Celera1636,720 - 74,901 (-)NCBICelera
Cytogenetic Map16p16NCBI
Polr3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543714,446,024 - 14,483,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543714,446,059 - 14,483,336 (+)NCBIChiLan1.0ChiLan1.0
POLR3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11077,157,976 - 77,213,019 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01074,496,121 - 74,550,054 (-)NCBIMhudiblu_PPA_v0panPan3
POLR3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl427,835,612 - 27,883,436 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1427,834,197 - 27,883,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Polr3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365211,570,863 - 1,613,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1953,411,869 - 53,462,773 (+)NCBI
ChlSab1.1 Ensembl953,411,889 - 53,464,668 (+)Ensembl
Polr3a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475411,166,126 - 11,215,205 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011305   ⟹   ENSSSCP00000011013
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1480,413,098 - 80,471,700 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046109   ⟹   ENSSSCP00000033300
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1480,413,098 - 80,471,695 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047864   ⟹   ENSSSCP00000034538
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1480,410,147 - 80,471,679 (-)Ensembl
RefSeq Acc Id: XM_001929360   ⟹   XP_001929395
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,410,143 - 80,471,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983365   ⟹   XP_013838819
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,413,111 - 80,471,735 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001929395 (Get FASTA)   NCBI Sequence Viewer  
  XP_013838819 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001929395   ⟸   XM_001929360
- Peptide Label: isoform X2
- UniProtKB: A0A286ZPB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838819   ⟸   XM_013983365
- Peptide Label: isoform X1
- UniProtKB: A0A286ZSI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011013   ⟸   ENSSSCT00000011305
RefSeq Acc Id: ENSSSCP00000033300   ⟸   ENSSSCT00000046109
RefSeq Acc Id: ENSSSCP00000034538   ⟸   ENSSSCT00000047864
Protein Domains
RPOLA_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001708 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000011013 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000033300 UniProtKB/TrEMBL
  ENSSSCP00000034538 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070002709 UniProtKB/TrEMBL
  ENSSSCP00070002718 UniProtKB/TrEMBL
  ENSSSCP00070002747 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011305 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000046109 UniProtKB/TrEMBL
  ENSSSCT00000047864 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070003270 UniProtKB/TrEMBL
  ENSSSCT00070003284 UniProtKB/TrEMBL
  ENSSSCT00070003319 UniProtKB/TrEMBL
Gene3D-CATH 1.10.132.30 UniProtKB/TrEMBL
  1.10.274.100 UniProtKB/TrEMBL
InterPro RNA_pol_asu UniProtKB/TrEMBL
  RNA_pol_N UniProtKB/TrEMBL
  RNA_pol_Rpb1_1 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3_sf UniProtKB/TrEMBL
  RNA_pol_Rpb1_4 UniProtKB/TrEMBL
  RNA_pol_Rpb1_5 UniProtKB/TrEMBL
  RNAP_III_Rpc1_C UniProtKB/TrEMBL
  RNAP_III_RPC1_N UniProtKB/TrEMBL
  Rpb1_funnel_sf UniProtKB/TrEMBL
KEGG Report ssc:100156229 UniProtKB/TrEMBL
NCBI Gene POLR3A ENTREZGENE
Pfam RNA_pol_Rpb1_1 UniProtKB/TrEMBL
  RNA_pol_Rpb1_2 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3 UniProtKB/TrEMBL
  RNA_pol_Rpb1_4 UniProtKB/TrEMBL
  RNA_pol_Rpb1_5 UniProtKB/TrEMBL
SMART RPOLA_N UniProtKB/TrEMBL
UniProt A0A286ZPB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZSI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJU1_PIG UniProtKB/TrEMBL
  A0A4X1SK18_PIG UniProtKB/TrEMBL
  A0A4X1SL14_PIG UniProtKB/TrEMBL
  F1S2E6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91654 ENTREZGENE