SMIM20 (small integral membrane protein 20) - Rat Genome Database

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Gene: SMIM20 (small integral membrane protein 20) Sus scrofa
Analyze
Symbol: SMIM20
Name: small integral membrane protein 20
RGD ID: 14232147
Description: INVOLVED IN mitochondrial cytochrome c oxidase assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1819,701,022 - 19,714,563 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2820,091,900 - 20,105,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SMIM20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1819,701,022 - 19,714,563 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2820,091,900 - 20,105,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,914,220 - 25,929,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl425,861,830 - 25,929,813 (+)EnsemblGRCh38hg38GRCh38
GRCh37425,915,842 - 25,931,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36425,524,626 - 25,540,611 (+)NCBINCBI36Build 36hg18NCBI36
Celera426,363,965 - 26,380,057 (+)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef425,254,090 - 25,269,776 (+)NCBIHuRef
CHM1_1425,915,589 - 25,931,294 (+)NCBICHM1_1
T2T-CHM13v2.0425,896,311 - 25,911,902 (+)NCBIT2T-CHM13v2.0
Smim20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39553,424,448 - 53,435,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl553,424,425 - 53,435,882 (+)EnsemblGRCm39 Ensembl
GRCm38553,267,106 - 53,278,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl553,267,083 - 53,278,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37553,658,345 - 53,669,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36553,551,738 - 53,566,791 (+)NCBIMGSCv36mm8
Celera550,647,813 - 50,659,239 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map529.05NCBI
Smim20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81461,924,155 - 61,935,630 (-)NCBIGRCr8
mRatBN7.21457,711,304 - 57,722,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1457,711,307 - 57,722,681 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1462,113,099 - 62,124,466 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,424,314 - 63,435,694 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01459,821,078 - 59,832,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,057,493 - 60,069,870 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01460,179,583 - 60,190,533 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,461,060 - 62,470,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1456,813,315 - 56,824,681 (-)NCBICelera
Cytogenetic Map14q11NCBI
Smim20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544319,243,419 - 19,253,798 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544319,242,776 - 19,254,002 (-)NCBIChiLan1.0ChiLan1.0
SMIM20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2326,153,851 - 26,175,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1426,356,606 - 26,371,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0420,312,816 - 20,327,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1425,591,220 - 25,606,393 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl425,591,220 - 25,606,393 (+)Ensemblpanpan1.1panPan2
SMIM20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,481,897 - 84,494,863 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,481,901 - 84,494,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha386,993,124 - 87,005,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0385,451,073 - 85,463,991 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl385,449,481 - 85,463,978 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1384,572,599 - 84,585,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0384,692,674 - 84,705,528 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,077,331 - 85,090,191 (-)NCBIUU_Cfam_GSD_1.0
Smim20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,045,100 - 50,053,417 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364773,746,766 - 3,755,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364773,746,766 - 3,755,075 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12724,413,717 - 24,436,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604770,929,248 - 70,944,265 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247556,626,527 - 6,635,786 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247556,625,911 - 6,635,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SMIM20
605 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 22 2 3 3
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_003356880   ⟹   XP_003356928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1819,701,022 - 19,714,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013978564   ⟹   XP_013834018
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1819,701,042 - 19,714,563 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003356928   ⟸   XM_003356880
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V8M4 (UniProtKB/TrEMBL),   A0A8D0HLP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013834018   ⟸   XM_013978564
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QXM2 (UniProtKB/TrEMBL),   A0A4X1V8N2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040571 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005000632 UniProtKB/TrEMBL
  ENSSSCG00015017572 UniProtKB/TrEMBL
  ENSSSCG00025007227 UniProtKB/TrEMBL
  ENSSSCG00030042633 UniProtKB/TrEMBL
  ENSSSCG00035009806 UniProtKB/TrEMBL
  ENSSSCG00040050857 UniProtKB/TrEMBL
  ENSSSCG00045024173 UniProtKB/TrEMBL
  ENSSSCG00050032503 UniProtKB/TrEMBL
  ENSSSCG00055020071 UniProtKB/TrEMBL
  ENSSSCG00060055940 UniProtKB/TrEMBL
  ENSSSCG00065031323 UniProtKB/TrEMBL
  ENSSSCG00070022686 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057236.3 UniProtKB/TrEMBL
  ENSSSCT00000083200 ENTREZGENE
  ENSSSCT00000083200.2 UniProtKB/TrEMBL
  ENSSSCT00000094796.1 UniProtKB/TrEMBL
  ENSSSCT00005000818.1 UniProtKB/TrEMBL
  ENSSSCT00015023196.1 UniProtKB/TrEMBL
  ENSSSCT00015023243.1 UniProtKB/TrEMBL
  ENSSSCT00025009593.1 UniProtKB/TrEMBL
  ENSSSCT00025009604.1 UniProtKB/TrEMBL
  ENSSSCT00030059375.1 UniProtKB/TrEMBL
  ENSSSCT00035012272.1 UniProtKB/TrEMBL
  ENSSSCT00035012278.1 UniProtKB/TrEMBL
  ENSSSCT00040068691.1 UniProtKB/TrEMBL
  ENSSSCT00045041212.1 UniProtKB/TrEMBL
  ENSSSCT00045041247.1 UniProtKB/TrEMBL
  ENSSSCT00050043635.1 UniProtKB/TrEMBL
  ENSSSCT00055039336.1 UniProtKB/TrEMBL
  ENSSSCT00060076212.1 UniProtKB/TrEMBL
  ENSSSCT00060076216.1 UniProtKB/TrEMBL
  ENSSSCT00065042337.1 UniProtKB/TrEMBL
  ENSSSCT00065042340.1 UniProtKB/TrEMBL
  ENSSSCT00070045096.1 UniProtKB/TrEMBL
  ENSSSCT00070045101.1 UniProtKB/TrEMBL
InterPro SMIM20 UniProtKB/TrEMBL
KEGG Report ssc:100622616 UniProtKB/TrEMBL
NCBI Gene SMIM20 ENTREZGENE
PANTHER PTHR34923 UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 20 UniProtKB/TrEMBL
Pfam DUF4538 UniProtKB/TrEMBL
UniProt A0A287AK36_PIG UniProtKB/TrEMBL
  A0A4X1V8M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V8N2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QXM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HLP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F9S1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98965 ENTREZGENE