CACNA1B (calcium voltage-gated channel subunit alpha1 B) - Rat Genome Database

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Gene: CACNA1B (calcium voltage-gated channel subunit alpha1 B) Sus scrofa
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Symbol: CACNA1B
Name: calcium voltage-gated channel subunit alpha1 B
RGD ID: 14231930
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); protein phosphatase 2A binding (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); brain edema (ortholog); FOUND IN axon terminus (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent N-type calcium channel subunit alpha-1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNA1B
(Sus scrofa - pig)
No map positions available.
CACNA1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,877,782 - 138,124,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,877,782 - 138,124,624 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,772,234 - 141,019,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,892,062 - 140,136,449 (+)NCBINCBI36Build 36hg18NCBI36
Build 349138,048,077 - 138,292,468NCBI
Cytogenetic Map9q34.3NCBI
HuRef9110,240,583 - 110,486,666 (+)NCBIHuRef
CHM1_19140,920,972 - 141,166,813 (+)NCBICHM1_1
T2T-CHM13v2.09150,142,926 - 150,389,904 (+)NCBIT2T-CHM13v2.0
Cacna1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,493,872 - 24,653,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,493,899 - 24,653,164 (-)EnsemblGRCm39 Ensembl
GRCm38224,603,860 - 24,763,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,603,887 - 24,763,152 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,461,895 - 24,618,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,428,384 - 24,585,161 (-)NCBIMGSCv36mm8
Celera224,325,634 - 24,485,472 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.58NCBI
Cacna1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,779,133 - 27,944,292 (-)NCBIGRCr8
mRatBN7.237,380,892 - 7,546,104 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,380,922 - 7,546,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,484,372 - 10,649,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,070,601 - 19,236,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,260,424 - 17,425,831 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,740,026 - 1,924,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,740,024 - 1,924,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,727,915 - 1,910,475 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.432,842,948 - 3,039,747 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.132,873,390 - 3,039,747 (-)NCBI
Celera32,215,805 - 2,379,072 (-)NCBICelera
Cytogenetic Map3p13NCBI
Cacna1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,654,238 - 5,824,386 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,654,915 - 5,823,094 (+)NCBIChiLan1.0ChiLan1.0
CACNA1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,216,085 - 1,470,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,218,419 - 1,472,359 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,989,621 - 109,256,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,935,165 - 138,147,969 (+)NCBIpanpan1.1PanPan1.1panPan2
CACNA1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,813,625 - 48,009,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,816,393 - 48,009,406 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,000,692 - 47,196,388 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,674,418 - 48,870,501 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1947,454,379 - 47,647,489 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,750,936 - 47,946,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,799,821 - 47,993,105 (-)NCBIUU_Cfam_GSD_1.0
Cacna1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947203,066,422 - 203,243,631 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669133,698 - 308,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669133,488 - 308,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11275,441 - 335,980 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1278,011 - 335,820 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660585,057,291 - 5,305,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476081,236 - 257,787 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476078,754 - 257,901 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system
High
Medium 1
Low 3 22
Below cutoff 7 1 2

Sequence


Protein Sequences
Protein RefSeqs XP_020936695 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000033749.2
  ENSSSCP00000045750
  ENSSSCP00000045750.3
  ENSSSCP00025033610.1
  ENSSSCP00045021589.1
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033493 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025054099 UniProtKB/TrEMBL
  ENSSSCG00045017267 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044131 ENTREZGENE
  ENSSSCT00000044131.3 UniProtKB/TrEMBL
  ENSSSCT00000056230.3 UniProtKB/TrEMBL
  ENSSSCT00025077537.1 UniProtKB/TrEMBL
  ENSSSCT00045031149.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/TrEMBL
InterPro EF_hand_dom UniProtKB/TrEMBL
  GPHH_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/TrEMBL
  VDCC_N_a1su UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CACNA1B ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT N-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1B UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/TrEMBL
  GPHH UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS CACHANNEL UniProtKB/TrEMBL
  NVDCCALPHA1 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A286ZQ69_PIG UniProtKB/TrEMBL
  A0A287APC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HSW8_PIG UniProtKB/TrEMBL