TRIP4 (thyroid hormone receptor interactor 4) - Rat Genome Database
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Gene: TRIP4 (thyroid hormone receptor interactor 4) Sus scrofa
Analyze
Symbol: TRIP4
Name: thyroid hormone receptor interactor 4
RGD ID: 14231654
Description: ENCODES a protein that exhibits nuclear receptor binding (ortholog); INVOLVED IN regulation of myoblast differentiation (ortholog); toxin transport (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy, Davignon-Chauveau Type (ortholog); nemaline myopathy 6 (ortholog); Spinal Muscular Atrophy with Congenital Bone Fractures 1 (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: activating signal cointegrator 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,586,031 - 107,655,214 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,588,778 - 107,654,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,414,252 - 118,618,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
TRIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,586,031 - 107,655,214 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,588,778 - 107,654,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,414,252 - 118,618,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1564,387,748 - 64,455,303 (+)EnsemblGRCh38hg38GRCh38
GRCh381564,387,836 - 64,455,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371564,680,035 - 64,747,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361562,467,073 - 62,534,555 (+)NCBINCBI36hg18NCBI36
Build 341562,467,072 - 62,534,553NCBI
Celera1541,558,018 - 41,625,175 (+)NCBI
Cytogenetic Map15q22.31NCBI
HuRef1541,503,896 - 41,571,686 (+)NCBIHuRef
CHM1_11564,799,393 - 64,866,848 (+)NCBICHM1_1
Trip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,736,208 - 65,816,150 (-)NCBIGRCm39mm39
GRCm39 Ensembl965,736,212 - 65,816,076 (-)Ensembl
GRCm38965,828,926 - 65,908,875 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,828,930 - 65,908,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37965,676,733 - 65,756,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv36965,630,231 - 65,706,792 (-)NCBImm8
Celera963,066,228 - 63,147,772 (-)NCBICelera
Cytogenetic Map9CNCBI
Trip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2866,351,861 - 66,439,679 (-)NCBI
Rnor_6.0 Ensembl871,371,370 - 71,533,459 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0871,369,121 - 71,533,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0871,147,159 - 71,205,615 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0871,051,695 - 71,058,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,090,427 - 70,179,003 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1870,109,684 - 70,178,264 (-)NCBI
Celera865,743,666 - 65,829,403 (-)NCBICelera
Cytogenetic Map8q24NCBI
Trip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545011,005,849 - 11,088,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545011,005,842 - 11,088,192 (-)NCBIChiLan1.0ChiLan1.0
TRIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11561,623,584 - 61,692,963 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1561,623,584 - 61,692,963 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01543,332,107 - 43,400,522 (+)NCBIMhudiblu_PPA_v0panPan3
TRIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3028,851,374 - 28,908,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13028,851,314 - 28,908,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Trip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647124,795,718 - 24,868,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12619,065,934 - 19,133,489 (-)NCBI
ChlSab1.1 Ensembl2619,065,887 - 19,133,448 (-)Ensembl
Trip4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247818,118,382 - 8,191,823 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005028   ⟹   ENSSSCP00000004908
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1107,588,793 - 107,654,632 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059350   ⟹   ENSSSCP00000038756
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1107,586,031 - 107,655,214 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078372   ⟹   ENSSSCP00000072888
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1107,613,593 - 107,654,639 (-)Ensembl
RefSeq Acc Id: XM_021093813   ⟹   XP_020949472
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11107,588,778 - 107,654,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093818   ⟹   XP_020949477
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11107,599,740 - 107,654,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093826   ⟹   XP_020949485
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11107,588,778 - 107,654,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093833   ⟹   XP_020949492
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11107,588,778 - 107,654,653 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020949472 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949477 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949485 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949492 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020949485   ⟸   XM_021093826
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020949472   ⟸   XM_021093813
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020949492   ⟸   XM_021093833
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020949477   ⟸   XM_021093818
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000072888   ⟸   ENSSSCT00000078372
RefSeq Acc Id: ENSSSCP00000004908   ⟸   ENSSSCT00000005028
RefSeq Acc Id: ENSSSCP00000038756   ⟸   ENSSSCT00000059350
Protein Domains
ASCH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004908 UniProtKB/TrEMBL
  ENSSSCP00000038756 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072888 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005028 UniProtKB/TrEMBL
  ENSSSCT00000059350 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000078372 ENTREZGENE, UniProtKB/TrEMBL
InterPro ASCH_domain UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  TRIP4-like UniProtKB/TrEMBL
  Znf_C2HC5 UniProtKB/TrEMBL
NCBI Gene TRIP4 ENTREZGENE
PANTHER PTHR12963 UniProtKB/TrEMBL
Pfam ASCH UniProtKB/TrEMBL
  zf-C2HC5 UniProtKB/TrEMBL
SMART ASCH UniProtKB/TrEMBL
Superfamily-SCOP SSF88697 UniProtKB/TrEMBL
UniProt A0A287A486_PIG UniProtKB/TrEMBL
  A0A5G2RKY6_PIG UniProtKB/TrEMBL
  F1S0A8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94438 ENTREZGENE