TRIP4 (thyroid hormone receptor interactor 4)

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Gene: TRIP4 (thyroid hormone receptor interactor 4) Sus scrofa

Analyze

Symbol:

TRIP4

Name:

thyroid hormone receptor interactor 4

RGD ID:

14231654

Description:

ENCODES a protein that exhibits nuclear receptor binding (ortholog); INVOLVED IN regulation of myoblast differentiation (ortholog); toxin transport (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy, Davignon-Chauveau Type (ortholog); nemaline myopathy 6 (ortholog); Spinal Muscular Atrophy with Congenital Bone Fractures 1 (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

activating signal cointegrator 1

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,586,031 - 107,655,214 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,588,778 - 107,654,679 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,414,252 - 118,618,557 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Congenital Muscular Dystrophy, Davignon-Chauveau Type (ISO)

nemaline myopathy 6 (ISO)

Spinal Muscular Atrophy with Congenital Bone Fractures 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular estrogen receptor signaling pathway (IEA)

positive regulation of transcription, DNA-templated (IBA)

regulation of myoblast differentiation (IEA,ISO)

regulation of transcription, DNA-templated (IEA)

toxin transport (IEA,ISO)

Cellular Component

activating signal cointegrator 1 complex (IEA)

centrosome (IEA,ISO)

cytoplasm (IEA)

neuromuscular junction (IEA)

nuclear body (IEA)

nucleoplasm (ISO)

nucleus (IBA,IEA)

protein-containing complex (ISO)

Molecular Function

estrogen receptor binding (IEA)

histone acetyltransferase binding (IEA)

nuclear receptor binding (ISO)

protease binding (IEA)

protein binding (ISO)

protein kinase binding (IEA)

transcription coactivator activity (IBA)

ubiquitin-like protein ligase binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

TRIP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,586,031 - 107,655,214 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,588,778 - 107,654,679 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,414,252 - 118,618,557 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	64,387,748 - 64,455,303 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	64,387,836 - 64,455,303 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	64,680,035 - 64,747,502 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,467,073 - 62,534,555 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	62,467,072 - 62,534,553	NCBI
Celera	15	41,558,018 - 41,625,175 (+)	NCBI
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,503,896 - 41,571,686 (+)	NCBI		HuRef
CHM1_1	15	64,799,393 - 64,866,848 (+)	NCBI		CHM1_1

Trip4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,736,208 - 65,816,150 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	65,736,212 - 65,816,076 (-)	Ensembl
GRCm38	9	65,828,926 - 65,908,875 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	65,828,930 - 65,908,794 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	65,676,733 - 65,756,601 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	65,630,231 - 65,706,792 (-)	NCBI			mm8
Celera	9	63,066,228 - 63,147,772 (-)	NCBI		Celera
Cytogenetic Map	9	C	NCBI

Trip4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	66,351,861 - 66,439,679 (-)	NCBI
Rnor_6.0 Ensembl	8	71,371,370 - 71,533,459 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	71,369,121 - 71,533,281 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	71,147,159 - 71,205,615 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	8	71,051,695 - 71,058,129 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,090,427 - 70,179,003 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	70,109,684 - 70,178,264 (-)	NCBI
Celera	8	65,743,666 - 65,829,403 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Trip4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,005,849 - 11,088,192 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,005,842 - 11,088,192 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRIP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	61,623,584 - 61,692,963 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,623,584 - 61,692,963 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	43,332,107 - 43,400,522 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TRIP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	30	28,851,374 - 28,908,940 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	30	28,851,314 - 28,908,991 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Trip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936471	24,795,718 - 24,868,440 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIP4
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,065,934 - 19,133,489 (-)	NCBI
ChlSab1.1 Ensembl	26	19,065,887 - 19,133,448 (-)	Ensembl

Trip4
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624781	8,118,382 - 8,191,823 (-)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1
Low	10	4	3	4	2	23	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021093813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021093818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021093826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021093833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01077106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000005028 ⟹ ENSSSCP00000004908

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	107,588,793 - 107,654,632 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000059350 ⟹ ENSSSCP00000038756

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	107,586,031 - 107,655,214 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000078372 ⟹ ENSSSCP00000072888

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	107,613,593 - 107,654,639 (-)	Ensembl

RefSeq Acc Id:

XM_021093813 ⟹ XP_020949472

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	107,588,778 - 107,654,679 (-)	NCBI

Sequence:

show sequence

GTCCAGCGCTGGACGCAGAGCTTTCGCAGAGCAGCTGGTTCCGGCTGGGGAAAATGGCGGTGGC
TGGGGCGGCGTCCCAGGAGCAGTTGGTGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGC
CTGGATGTCAGTGAGGAGATCATACAGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAG
AATATGTTACTGACCTCCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTAT
AAACAAATGGCAGAAGAATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAA
GACGAAATTTTAGATGGACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGAGAA
ACAAACAGGAAGTTCCTGCATTTACTGAACCTGATATGACCAAAGAGGTCAAAACACCTTTCGA
TTTGGCCAAGGCACAAGAGAACAGCAGCTCCTTAAAGAAGAAGACGAAGTTTGTCAGTTTATAC
ACTAAAGAGGGACAGGACAAGCTTGCAGTCCTGATCCCTGGTCGCCACCCTTGTGATTGCCTGG
GCCAGAAGCACAAGTTGATCAATAACTGTCTGATCTGTGGGCGAATTGTCTGTGAACAGGAGGG
TTCTGGCCCCTGCTTATTCTGTGGTACTCTGGTTTGTACTCGTGAAGAACAGGATATTTTACAG
CGTGACTCAAACAAGAGCCAGAAACTGCTGAAGAAGCTCATGTCAGGAGCAGAGAATTCTGGAA
AGTTGGACATCTCTACCAAGGACCTTCTTCCTCATCAAGAATTGCGATTTAAATCTGGTCTGGA
GAAGGCTATCAAGCATAAAGACAAACTGTTAGAGTTTGACAGAACTAGCATTCGAAGGACTCAA
GTCATTGATGATGAGTCAGATTACTTTGCCAGTGATTCTAACCAGTGGTTGTCCAAAATTGAGC
GTGAAGCCCTGCAGAAGCGAGAGGAGGAGCTGAGAGAATTTCGACATGCCTCTCGGCTCTCTAA
GAAGATCACCATTGACTTTGCAGGCAGGAGGATTGTGGAAGATGAAAATCCCCTAGCTGAGTAT
CACAGCAAACTAGATGAAGCAATACATGCCATTGCAAATGGAACCTTGAACCAGCCACTGGCCA
CATTGGATAGATCTTCTGAAGAGCCTTTGGGACTTCTGGTGAATCCCAACCTCTACCAGTCCCC
TCCCCAGTGGATAGACCAGACAGGTGTAGCCTCACAGAAGAAGGCTTTCCATTCAGCAGGATCA
GGACTAGAGTTCAACTCAGGTCGACATCCGTTTCGAATCCAGGACCAAGAATTTCAGGAAGGCT
TTGATGGTGGCTGGTGCCTCTCTATGCATCAGCCTTGGGCTTCTCTGCTTGTCAGAGGGATTAA
AAGGGTGGAGGGCAGAAGCTGGTACACCCCTCACAGAGGACGACTTTGGATAGCAGCCACAGCC
AAAAGACCTTCCCCTCAAGAAGTCTCAGAACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAG
ATGTGGAATTTCCAAATGACTATCCATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTG
CTTGTCCCAGAAGCAATTTAAAGATCAGTATCCAGACATGAGTCAAGAATCTGATTCTCCATTT
GTTTTCATCTGCACAAATCCCCAGGAAATGATTGTGAAGTTTCCTATTAAAGGAAATCCAAAAA
TCTGGAAACTGGATTCCAAGATCCATCAAGGAGCAAAGAAGGGGTTAATGAAGCAGAATAAAGC
TGTCTGACCCAGGAGAAAAGGAACTATACAGCATAGTGGAGTGTTGTGTATTAAACTTGCTATC
CACTGGTCCTTTGGAATTGAAGCAGTAGAAATCTAAAGGCTTGACATCAGGCTTGAACCTCTCA
GAATTTAAAGTCTTATCAAAATATGTATATTTTTCTTAAAGAATGGGATTCATTATGTAATGGG
TCAAAATCTTTGAATACATTATTTATAAAAACTGACTTTAAAAATTCTA

hide sequence

RefSeq Acc Id:

XM_021093818 ⟹ XP_020949477

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	107,599,740 - 107,654,679 (-)	NCBI

Sequence:

show sequence

GTCCAGCGCTGGACGCAGAGCTTTCGCAGAGCAGCTGGTTCCGGCTGGGGAAAATGGCGGTGGC
TGGGGCGGCGTCCCAGGAGCAGTTGGTGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGC
CTGGATGTCAGTGAGGAGATCATACAGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAG
AATATGTTACTGACCTCCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTAT
AAACAAATGGCAGAAGAATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAA
GACGAAATTTTAGATGGACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGAGAA
ACAAACAGGAAGTTCCTGCATTTACTGAACCTGATATGACCAAAGAGGTCAAAACACCTTTCGA
TTTGGCCAAGGCACAAGAGAACAGCAGCTCCTTAAAGAAGAAGACGAAGTTTGTCAGTTTATAC
ACTAAAGAGGGACAGGACAAGCTTGCAGTCCTGATCCCTGGTCGCCACCCTTGTGATTGCCTGG
GCCAGAAGCACAAGTTGATCAATAACTGTCTGATCTGTGGGCGAATTGTCTGTGAACAGGAGGG
TTCTGGCCCCTGCTTATTCTGTGGTACTCTGGTTTGTACTCGTGAAGAACAGGATATTTTACAG
CGTGACTCAAACAAGAGCCAGAAACTGCTGAAGAAGCTCATGTCAGGAGCAGAGAATTCTGGAA
AGTTGGACATCTCTACCAAGGACCTTCTTCCTCATCAAGAATTGCGATTTAAATCTGGTCTGGA
GAAGGCTATCAAGCATAAAGACAAACTGTTAGAGTTTGACAGAACTAGCATTCGAAGGACTCAA
GTCATTGATGATGAGTCAGATTACTTTGCCAGTGATTCTAACCAGTGGTTGTCCAAAATTGAGC
GTGAAGCCCTGCAGAAGCGAGAGGAGGAGCTGAGAGAATTTCGACATGCCTCTCGGCTCTCTAA
GAAGATCACCATTGACTTTGCAGGCAGGAGGATTGTGGAAGATGAAAATCCCCTAGCTGAGTAT
CACAGCAAACTAGATGAAGCAATACATGCCATTGCAAATGGAACCTTGAACCAGCCACTGGCCA
CATTGGATAGATCTTCTGAAGAGCCTTTGGGACTTCTGGTGAATCCCAACCTCTACCAGTCCCC
TCCCCAGTGGATAGACCAGACAGGTGTAGCCTCACAGAAGAAGGCTTTCCATTCAGCAGGATCA
GGACTAGAGTTCAACTCAGGTCGACATCCGTTTCGAATCCAGGACCAAGAATTTCAGGAAGGCT
TTGATGGTGGCTGGTGCCTCTCTATGCATCAGCCTTGGGCTTCTCTGCTTGTCAGAGGGATTAA
AAGGGTGGAGGGCAGAAGCTGGTACACCCCTCACAGAGGACGACTTTGGATAGCAGCCACAGCC
AAAAGACCTTCCCCTCAAGAAGTCTCAGAACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAG
ATGTGGAATTTCCAAATGACTATCCATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTG
CTTGTCCCAGAAGCAATTTAAAGATCAGGACTGCACCTACAGCATAGGAAAGTTCCTAGAGGTC
GAATTGGAGCTACAGCTGCCAGCCTGTGCCACGGCCACAGCAACTTGGCATCTGAGTCACGTCT
GTGACCTACACCTCAGCTCACGGCAATGCTGGATCCCCGACCCCCTGAGGATGGCCAGGGATTA
AACCTGAACCCTCATGGATACTAGTCAGATTCACTTCCACTGCACCATGAAGGGAACTCCCTTT
TTTCATTTTTAAAAGTTTTATTGAAGTATAGTTGATTTACAATGTTGTGTAGATAATCTTTTTA
TGAATTTTGTTGTAAAGGGAGTCTGAGAAATGGGGCAATAGTTGGAGGAAGACTGTGGGATCTG
GAGAGTTTTTTGTCTTATGGCAGATATTATAGAACATATCTTTGTTAATGAGATTGATCCAGGA
GAGAAAGAACATTATTATTATTATTATTATTATTATTATTA

hide sequence

RefSeq Acc Id:

XM_021093826 ⟹ XP_020949485

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	107,588,778 - 107,654,679 (-)	NCBI

Sequence:

show sequence

GTCCAGCGCTGGACGCAGAGCTTTCGCAGAGCAGCTGGTTCCGGCTGGGGAAAATGGCGGTGGC
TGGGGCGGCGTCCCAGGAGCAGTTGGTGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGC
CTGGATGTCAGTGAGGAGATCATACAGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAG
AATATGTTACTGACCTCCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTAT
AAACAAATGGCAGAAGAATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAA
GACGAAATTTTAGATGGACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGAGAA
ACAAACAGGAAGTTCCTGCATTTACTGAACCTGATATGACCAAAGAGGTCAAAACACCTTTCGA
TTTGGCCAAGGTTTGTACTCGTGAAGAACAGGATATTTTACAGCGTGACTCAAACAAGAGCCAG
AAACTGCTGAAGAAGCTCATGTCAGGAGCAGAGAATTCTGGAAAGTTGGACATCTCTACCAAGG
ACCTTCTTCCTCATCAAGAATTGCGATTTAAATCTGGTCTGGAGAAGGCTATCAAGCATAAAGA
CAAACTGTTAGAGTTTGACAGAACTAGCATTCGAAGGACTCAAGTCATTGATGATGAGTCAGAT
TACTTTGCCAGTGATTCTAACCAGTGGTTGTCCAAAATTGAGCGTGAAGCCCTGCAGAAGCGAG
AGGAGGAGCTGAGAGAATTTCGACATGCCTCTCGGCTCTCTAAGAAGATCACCATTGACTTTGC
AGGCAGGAGGATTGTGGAAGATGAAAATCCCCTAGCTGAGTATCACAGCAAACTAGATGAAGCA
ATACATGCCATTGCAAATGGAACCTTGAACCAGCCACTGGCCACATTGGATAGATCTTCTGAAG
AGCCTTTGGGACTTCTGGTGAATCCCAACCTCTACCAGTCCCCTCCCCAGTGGATAGACCAGAC
AGGTGTAGCCTCACAGAAGAAGGCTTTCCATTCAGCAGGATCAGGACTAGAGTTCAACTCAGGT
CGACATCCGTTTCGAATCCAGGACCAAGAATTTCAGGAAGGCTTTGATGGTGGCTGGTGCCTCT
CTATGCATCAGCCTTGGGCTTCTCTGCTTGTCAGAGGGATTAAAAGGGTGGAGGGCAGAAGCTG
GTACACCCCTCACAGAGGACGACTTTGGATAGCAGCCACAGCCAAAAGACCTTCCCCTCAAGAA
GTCTCAGAACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAGATGTGGAATTTCCAAATGACT
ATCCATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTGCTTGTCCCAGAAGCAATTTAA
AGATCAGTATCCAGACATGAGTCAAGAATCTGATTCTCCATTTGTTTTCATCTGCACAAATCCC
CAGGAAATGATTGTGAAGTTTCCTATTAAAGGAAATCCAAAAATCTGGAAACTGGATTCCAAGA
TCCATCAAGGAGCAAAGAAGGGGTTAATGAAGCAGAATAAAGCTGTCTGACCCAGGAGAAAAGG
AACTATACAGCATAGTGGAGTGTTGTGTATTAAACTTGCTATCCACTGGTCCTTTGGAATTGAA
GCAGTAGAAATCTAAAGGCTTGACATCAGGCTTGAACCTCTCAGAATTTAAAGTCTTATCAAAA
TATGTATATTTTTCTTAAAGAATGGGATTCATTATGTAATGGGTCAAAATCTTTGAATACATTA
TTTATAAAAACTGACTTTAAAAATTCTA

hide sequence

RefSeq Acc Id:

XM_021093833 ⟹ XP_020949492

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	107,588,778 - 107,654,653 (-)	NCBI

Sequence:

show sequence

CAGAGCAGCTGGTTCCGGCTGGGGAAAATGGCGGTGGCTGGGGCGGCGTCCCAGGAGCAGTTGG
TGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGCCTGGATGTCAGTGAGGAGATCATACA
GTGCTGTGCTTGCCAGGTGCTGGAACTGGCAAAGATGGTTGATGGCTGCTGAAGTGGAGGAAGT
GCAGGGTGTTGTTGGAGCGTTGGAGAAAGGATTCTCGTTAAGATTTGAGAAACTCAGAAGGTTA
ATTGCAAGGGGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAGAATATGTTACTGACCT
CCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTATAAACAAATGGCAGAAG
AATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAAGACGAAATTTTAGATG
GACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGAGAAACAAACAGGAAGTTCC
TGCATTTACTGAACCTGATATGACCAAAGAGGTCAAAACACCTTTCGATTTGGCCAAGGCACAA
GAGAACAGCAGCTCCTTAAAGAAGAAGACGAAGTTTGTCAGTTTATACACTAAAGAGGGACAGG
ACAAGCTTGCAGTCCTGATCCCTGGTCGCCACCCTTGTGATTGCCTGGGCCAGAAGCACAAGTT
GATCAATAACTGTCTGATCTGTGGGCGAATTGTCTGTGAACAGGAGGGTTCTGGCCCCTGCTTA
TTCTGTGGTACTCTGGTTTGTACTCGTGAAGAACAGGATATTTTACAGCGTGACTCAAACAAGA
GCCAGAAACTGCTGAAGAAGCTCATGTCAGGAGCAGAGAATTCTGGAAAGTTGGACATCTCTAC
CAAGGACCTTCTTCCTCATCAAGAATTGCGATTTAAATCTGGTCTGGAGAAGGCTATCAAGCAT
AAAGACAAACTGTTAGAGTTTGACAGAACTAGCATTCGAAGGACTCAAGTCATTGATGATGAGT
CAGATTACTTTGCCAGTGATTCTAACCAGTGGTTGTCCAAAATTGAGCGTGAAGCCCTGCAGAA
GCGAGAGGAGGAGCTGAGAGAATTTCGACATGCCTCTCGGCTCTCTAAGAAGATCACCATTGAC
TTTGCAGGCAGGAGGATTGTGGAAGATGAAAATCCCCTAGCTGAGTATCACAGCAAACTAGATG
AAGCAATACATGCCATTGCAAATGGAACCTTGAACCAGCCACTGGCCACATTGGATAGATCTTC
TGAAGAGCCTTTGGGACTTCTGGTGAATCCCAACCTCTACCAGTCCCCTCCCCAGTGGATAGAC
CAGACAGGTGTAGCCTCACAGAAGAAGGCTTTCCATTCAGCAGGATCAGGACTAGAGTTCAACT
CAGGTCGACATCCGTTTCGAATCCAGGACCAAGAATTTCAGGAAGGCTTTGATGGTGGCTGGTG
CCTCTCTATGCATCAGCCTTGGGCTTCTCTGCTTGTCAGAGGGATTAAAAGGGTGGAGGGCAGA
AGCTGGTACACCCCTCACAGAGGACGACTTTGGATAGCAGCCACAGCCAAAAGACCTTCCCCTC
AAGAAGTCTCAGAACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAGATGTGGAATTTCCAAA
TGACTATCCATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTGCTTGTCCCAGAAGCAA
TTTAAAGATCAGTATCCAGACATGAGTCAAGAATCTGATTCTCCATTTGTTTTCATCTGCACAA
ATCCCCAGGAAATGATTGTGAAGTTTCCTATTAAAGGAAATCCAAAAATCTGGAAACTGGATTC
CAAGATCCATCAAGGAGCAAAGAAGGGGTTAATGAAGCAGAATAAAGCTGTCTGACCCAGGAGA
AAAGGAACTATACAGCATAGTGGAGTGTTGTGTATTAAACTTGCTATCCACTGGTCCTTTGGAA
TTGAAGCAGTAGAAATCTAAAGGCTTGACATCAGGCTTGAACCTCTCAGAATTTAAAGTCTTAT
CAAAATATGTATATTTTTCTTAAAGAATGGGATTCATTATGTAATGGGTCAAAATCTTTGAATA
CATTATTTATAAAAACTGACTTTAAAAATTCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020949472	(Get FASTA)	NCBI Sequence Viewer
	XP_020949477	(Get FASTA)	NCBI Sequence Viewer
	XP_020949485	(Get FASTA)	NCBI Sequence Viewer
	XP_020949492	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_020949485 ⟸ XM_021093826

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAVAGAASQEQLVGWCTQQLRKTFSLDVSEEIIQYILSIESAEEIREYVTDLLQGNEGKKGQFI
EELINKWQKNDQELISDALQQSFKKDEILDGQRSGDQLKRSRRKGRNKQEVPAFTEPDMTKEVK
TPFDLAKVCTREEQDILQRDSNKSQKLLKKLMSGAENSGKLDISTKDLLPHQELRFKSGLEKAI
KHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKIEREALQKREEELREFRHASRLSKKIT
IDFAGRRIVEDENPLAEYHSKLDEAIHAIANGTLNQPLATLDRSSEEPLGLLVNPNLYQSPPQW
IDQTGVASQKKAFHSAGSGLEFNSGRHPFRIQDQEFQEGFDGGWCLSMHQPWASLLVRGIKRVE
GRSWYTPHRGRLWIAATAKRPSPQEVSELQTTYLVLRGKDVEFPNDYPSGCLLGCVDLIDCLSQ
KQFKDQYPDMSQESDSPFVFICTNPQEMIVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV

hide sequence

RefSeq Acc Id:

XP_020949472 ⟸ XM_021093813

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAVAGAASQEQLVGWCTQQLRKTFSLDVSEEIIQYILSIESAEEIREYVTDLLQGNEGKKGQFI
EELINKWQKNDQELISDALQQSFKKDEILDGQRSGDQLKRSRRKGRNKQEVPAFTEPDMTKEVK
TPFDLAKAQENSSSLKKKTKFVSLYTKEGQDKLAVLIPGRHPCDCLGQKHKLINNCLICGRIVC
EQEGSGPCLFCGTLVCTREEQDILQRDSNKSQKLLKKLMSGAENSGKLDISTKDLLPHQELRFK
SGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKIEREALQKREEELREFRHAS
RLSKKITIDFAGRRIVEDENPLAEYHSKLDEAIHAIANGTLNQPLATLDRSSEEPLGLLVNPNL
YQSPPQWIDQTGVASQKKAFHSAGSGLEFNSGRHPFRIQDQEFQEGFDGGWCLSMHQPWASLLV
RGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSELQTTYLVLRGKDVEFPNDYPSGCLLGCVD
LIDCLSQKQFKDQYPDMSQESDSPFVFICTNPQEMIVKFPIKGNPKIWKLDSKIHQGAKKGLMK
QNKAV

hide sequence

RefSeq Acc Id:

XP_020949492 ⟸ XM_021093833

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTKEVKTPFDLAKAQENSSSLKKKTKFVSLYTKEGQDKLAVLIPGRHPCDCLGQKHKLINNCLI
CGRIVCEQEGSGPCLFCGTLVCTREEQDILQRDSNKSQKLLKKLMSGAENSGKLDISTKDLLPH
QELRFKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKIEREALQKREEELR
EFRHASRLSKKITIDFAGRRIVEDENPLAEYHSKLDEAIHAIANGTLNQPLATLDRSSEEPLGL
LVNPNLYQSPPQWIDQTGVASQKKAFHSAGSGLEFNSGRHPFRIQDQEFQEGFDGGWCLSMHQP
WASLLVRGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSELQTTYLVLRGKDVEFPNDYPSGC
LLGCVDLIDCLSQKQFKDQYPDMSQESDSPFVFICTNPQEMIVKFPIKGNPKIWKLDSKIHQGA
KKGLMKQNKAV

hide sequence

RefSeq Acc Id:

XP_020949477 ⟸ XM_021093818

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAVAGAASQEQLVGWCTQQLRKTFSLDVSEEIIQYILSIESAEEIREYVTDLLQGNEGKKGQFI
EELINKWQKNDQELISDALQQSFKKDEILDGQRSGDQLKRSRRKGRNKQEVPAFTEPDMTKEVK
TPFDLAKAQENSSSLKKKTKFVSLYTKEGQDKLAVLIPGRHPCDCLGQKHKLINNCLICGRIVC
EQEGSGPCLFCGTLVCTREEQDILQRDSNKSQKLLKKLMSGAENSGKLDISTKDLLPHQELRFK
SGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKIEREALQKREEELREFRHAS
RLSKKITIDFAGRRIVEDENPLAEYHSKLDEAIHAIANGTLNQPLATLDRSSEEPLGLLVNPNL
YQSPPQWIDQTGVASQKKAFHSAGSGLEFNSGRHPFRIQDQEFQEGFDGGWCLSMHQPWASLLV
RGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSELQTTYLVLRGKDVEFPNDYPSGCLLGCVD
LIDCLSQKQFKDQDCTYSIGKFLEVELELQLPACATATATWHLSHVCDLHLSSRQCWIPDPLRM
ARD

hide sequence

RefSeq Acc Id:

ENSSSCP00000072888 ⟸ ENSSSCT00000078372

RefSeq Acc Id:

ENSSSCP00000004908 ⟸ ENSSSCT00000005028

RefSeq Acc Id:

ENSSSCP00000038756 ⟸ ENSSSCT00000059350

Protein Domains

ASCH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000004552	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000004908	UniProtKB/TrEMBL
	ENSSSCP00000038756	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCP00000072888	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000005028	UniProtKB/TrEMBL
	ENSSSCT00000059350	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCT00000078372	ENTREZGENE, UniProtKB/TrEMBL
InterPro	ASCH_domain	UniProtKB/TrEMBL
	PUA-like_sf	UniProtKB/TrEMBL
	TRIP4-like	UniProtKB/TrEMBL
	Znf_C2HC5	UniProtKB/TrEMBL
NCBI Gene	TRIP4	ENTREZGENE
PANTHER	PTHR12963	UniProtKB/TrEMBL
Pfam	ASCH	UniProtKB/TrEMBL
	zf-C2HC5	UniProtKB/TrEMBL
SMART	ASCH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF88697	UniProtKB/TrEMBL
UniProt	A0A287A486_PIG	UniProtKB/TrEMBL
	A0A5G2RKY6_PIG	UniProtKB/TrEMBL
	F1S0A8_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:94438	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM