CYP2A19 (cytochrome P450 family 2 subfamily A member 19) - Rat Genome Database

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Gene: CYP2A19 (cytochrome P450 family 2 subfamily A member 19) Sus scrofa
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Symbol: CYP2A19
Name: cytochrome P450 family 2 subfamily A member 19
RGD ID: 14230852
Description: ENCODES a protein that exhibits oxidoreductase activity (ortholog); steroid hydroxylase activity (ortholog); INVOLVED IN coumarin metabolic process (ortholog); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); INTERACTS WITH coumarin; deoxynivalenol; o-aminoacetophenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coumarin 7-hydroxylase; CYP2A; CYP2A6; cytochrome P450 2A19; cytochrome p450 2A6
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,056,578 - 49,064,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,056,579 - 49,064,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,872,084 - 44,877,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:2861949   PMID:11737866   PMID:14681463   PMID:15265071   PMID:16978187   PMID:17121608   PMID:17145712   PMID:22301074   PMID:30032202   PMID:30171805  


Genomics

Comparative Map Data
CYP2A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,056,578 - 49,064,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,056,579 - 49,064,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,872,084 - 44,877,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP2A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,088,451 - 41,096,195 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,088,451 - 41,096,195 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,594,356 - 41,602,100 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,286,208 - 46,293,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 341946,286,207 - 46,293,939NCBI
Celera1938,394,537 - 38,402,261 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,026,475 - 38,034,212 (+)NCBIHuRef
CHM1_11941,594,072 - 41,601,816 (+)NCBICHM1_1
T2T-CHM13v2.01943,909,356 - 43,917,084 (+)NCBIT2T-CHM13v2.0
Cyp2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,359,278 - 91,372,554 (+)NCBIGRCr8
mRatBN7.2182,231,611 - 82,244,887 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,231,611 - 82,244,887 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx187,648,386 - 87,662,372 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,134,701 - 96,148,681 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,404,242 - 89,418,228 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,711,223 - 83,725,222 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,653,234 - 83,766,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0184,925,733 - 84,938,423 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,006,828 - 82,020,282 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,084,938 - 82,098,390 (+)NCBI
Celera176,649,089 - 76,662,287 (+)NCBICelera
Cytogenetic Map1q21NCBI
CYP2A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,932,246 - 112,938,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,931,985 - 112,938,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,334,931 - 112,340,932 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,530,545 - 113,536,550 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,529,888 - 113,536,652 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,090,324 - 113,096,328 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,722,239 - 112,728,251 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,716,309 - 113,722,322 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in CYP2A19
203 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 1 1 7 1 1
Below cutoff 6 2 3 4 2 14 2

Sequence


RefSeq Acc Id: ENSSSCT00000003325   ⟹   ENSSSCP00000003243
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl649,056,578 - 49,064,107 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063929   ⟹   ENSSSCP00000046064
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl649,056,578 - 49,064,085 (-)Ensembl
RefSeq Acc Id: NM_214417   ⟹   NP_999582
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1649,056,579 - 49,064,111 (-)NCBI
Sequence:
RefSeq Acc Id: NP_999582   ⟸   NM_214417
- UniProtKB: Q6YN43 (UniProtKB/TrEMBL),   A0A4X1SPA4 (UniProtKB/TrEMBL),   F1RHC1 (UniProtKB/TrEMBL),   Q8SQ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000003243   ⟸   ENSSSCT00000003325
RefSeq Acc Id: ENSSSCP00000046064   ⟸   ENSSSCT00000063929


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025043535 UniProtKB/TrEMBL
  ENSSSCG00030073449 UniProtKB/TrEMBL
  ENSSSCG00035000356 UniProtKB/TrEMBL
  ENSSSCG00045033255 UniProtKB/TrEMBL
  ENSSSCG00050010570 UniProtKB/TrEMBL
  ENSSSCG00055012667 UniProtKB/TrEMBL
  ENSSSCG00065022400 UniProtKB/TrEMBL
  ENSSSCG00070002499 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003325 ENTREZGENE
  ENSSSCT00000003325.4 UniProtKB/TrEMBL
  ENSSSCT00000063929.2 UniProtKB/TrEMBL
  ENSSSCT00025059077.1 UniProtKB/TrEMBL
  ENSSSCT00025059304.1 UniProtKB/TrEMBL
  ENSSSCT00025059495.1 UniProtKB/TrEMBL
  ENSSSCT00030102905.1 UniProtKB/TrEMBL
  ENSSSCT00030102930.1 UniProtKB/TrEMBL
  ENSSSCT00035000393.1 UniProtKB/TrEMBL
  ENSSSCT00035000397.1 UniProtKB/TrEMBL
  ENSSSCT00045056988.1 UniProtKB/TrEMBL
  ENSSSCT00045057051.1 UniProtKB/TrEMBL
  ENSSSCT00050014278.1 UniProtKB/TrEMBL
  ENSSSCT00050014303.1 UniProtKB/TrEMBL
  ENSSSCT00055025049.1 UniProtKB/TrEMBL
  ENSSSCT00055025128.1 UniProtKB/TrEMBL
  ENSSSCT00065029822.1 UniProtKB/TrEMBL
  ENSSSCT00065029829.1 UniProtKB/TrEMBL
  ENSSSCT00070004734.1 UniProtKB/TrEMBL
  ENSSSCT00070004759.1 UniProtKB/TrEMBL
  ENSSSCT00070004768.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_E_grp-I_CYP2A-like UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
KEGG Report ssc:403149 UniProtKB/TrEMBL
NCBI Gene CYP2A19 ENTREZGENE
PANTHER CYTOCHROME P450 2A6 UniProtKB/TrEMBL
  CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  EP450ICYP2A UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A287AQ91_PIG UniProtKB/TrEMBL
  A0A4X1SNE5_PIG UniProtKB/TrEMBL
  A0A4X1SPA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SPC3_PIG UniProtKB/TrEMBL
  F1RHC1 ENTREZGENE
  Q6YN43 ENTREZGENE, UniProtKB/TrEMBL
  Q8SQ68 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1RHC1 UniProtKB/TrEMBL
VGNC ID VGNC:103350 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-21 CYP2A19  cytochrome P450 family 2 subfamily A member 19  CYP2A19  cytochrome P450 2A19  Symbol and/or name change 19259463 PROVISIONAL