ZSCAN30 (zinc finger and SCAN domain containing 30) - Rat Genome Database

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Gene: ZSCAN30 (zinc finger and SCAN domain containing 30) Sus scrofa
Analyze
Symbol: ZSCAN30
Name: zinc finger and SCAN domain containing 30
RGD ID: 14229779
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and SCAN domain-containing protein 30
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,090,495 - 119,116,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,088,184 - 119,116,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,405,593 - 111,431,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZSCAN30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,090,495 - 119,116,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,088,184 - 119,116,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,405,593 - 111,431,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSCAN30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,251,062 - 35,290,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,251,058 - 35,290,245 (-)EnsemblGRCh38hg38GRCh38
GRCh371832,831,026 - 32,870,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,084,629 - 31,124,191 (-)NCBINCBI36Build 36hg18NCBI36
Celera1829,638,924 - 29,678,100 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,690,031 - 29,729,813 (-)NCBIHuRef
CHM1_11832,758,008 - 32,797,171 (-)NCBICHM1_1
T2T-CHM13v2.01835,442,347 - 35,481,602 (-)NCBIT2T-CHM13v2.0
Zscan30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,065,597 - 24,120,362 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,097,875 - 24,104,844 (-)EnsemblGRCm39 Ensembl
GRCm381823,932,591 - 23,987,305 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1823,964,818 - 23,987,226 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,129,476 - 24,140,056 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,110,237 - 24,114,799 (-)NCBIMGSCv36mm8
Celera1824,461,048 - 24,471,627 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.47NCBI
Zscan30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,524,313 - 15,540,983 (-)NCBIGRCr8
mRatBN7.21815,245,140 - 15,266,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,244,379 - 15,264,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,434,671 - 15,451,334 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,217,375 - 16,234,038 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,507,113 - 15,523,776 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,866,470 - 15,880,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,868,068 - 15,873,793 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01815,633,119 - 15,646,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,734,841 - 15,740,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11815,761,405 - 15,766,969 (-)NCBI
Celera1815,199,908 - 15,214,437 (-)NCBICelera
Cytogenetic Map18p12NCBI
ZSCAN30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,640,018 - 52,679,502 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,331,190 - 38,372,125 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,469,523 - 28,509,063 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,058,375 - 32,097,883 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,058,375 - 32,074,965 (-)Ensemblpanpan1.1panPan2
ZSCAN30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,741,734 - 54,748,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,742,067 - 54,746,668 (+)EnsemblCanFam3.1canFam3CanFam3.1
Zscan30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,460,608 - 50,475,816 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,787,933 - 9,803,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,788,240 - 9,802,619 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,475,194 - 45,615,750 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,497,362 - 45,508,287 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,977,945 - 20,013,372 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,680,315 - 9,686,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,678,549 - 9,708,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN30
788 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 3 1 23 2 2
Below cutoff 4 4 5 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037411   ⟹   ENSSSCP00000048080
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6119,090,495 - 119,116,270 (-)Ensembl
RefSeq Acc Id: XM_003127897   ⟹   XP_003127945
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16119,088,184 - 119,116,257 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127945 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000048080
  ENSSSCP00000048080.2
Reference Protein Sequences
RefSeq Acc Id: XP_003127945   ⟸   XM_003127897
- Sequence:
RefSeq Acc Id: ENSSSCP00000048080   ⟸   ENSSSCT00000037411
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003740 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037411 ENTREZGENE
  ENSSSCT00000037411.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZSCAN30 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 879 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287AVZ5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98683 ENTREZGENE