NDST1 (N-deacetylase and N-sulfotransferase 1) - Rat Genome Database

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Gene: NDST1 (N-deacetylase and N-sulfotransferase 1) Sus scrofa
Analyze
Symbol: NDST1
Name: N-deacetylase and N-sulfotransferase 1
RGD ID: 14228380
Description: ENCODES a protein that exhibits heparan sulfate N-deacetylase activity (ortholog); sulfotransferase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aorta development (ortholog); cardiac septum development (ortholog); ASSOCIATED WITH complex cortical dysplasia with other brain malformations (ortholog); Craniofacial Abnormalities (ortholog); Eye Abnormalities (ortholog); FOUND IN Golgi membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1; N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,489,521 - 151,522,751 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,433,925 - 151,525,909 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
NDST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,489,521 - 151,522,751 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,433,925 - 151,525,909 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NDST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5150,485,818 - 150,558,211 (+)EnsemblGRCh38hg38GRCh38
GRCh385150,497,779 - 150,558,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375149,877,341 - 149,937,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,880,623 - 149,917,966 (+)NCBINCBI36hg18NCBI36
Build 345149,880,622 - 149,917,966NCBI
Celera5145,968,756 - 146,018,856 (+)NCBI
Cytogenetic Map5q33.1NCBI
HuRef5145,034,217 - 145,084,242 (+)NCBIHuRef
CHM1_15149,320,110 - 149,370,203 (+)NCBICHM1_1
Ndst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,817,566 - 60,907,465 (-)NCBIGRCm39mm39
GRCm39 Ensembl1860,817,566 - 60,881,722 (-)Ensembl
GRCm381860,684,494 - 60,749,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,684,494 - 60,748,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371860,845,617 - 60,873,043 (-)NCBIGRCm37mm9NCBIm37
MGSCv361860,811,332 - 60,838,758 (-)NCBImm8
Celera1861,969,670 - 61,997,089 (-)NCBICelera
Cytogenetic Map18E1NCBI
Ndst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,136,887 - 54,199,545 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1854,140,779 - 54,178,191 (-)Ensembl
Rnor_6.01855,951,497 - 56,014,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1855,955,389 - 55,992,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,189,496 - 55,226,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,638,891 - 56,677,831 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11856,711,122 - 56,750,063 (-)NCBI
Celera1852,295,217 - 52,332,793 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ndst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554153,999,473 - 4,060,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,017,142 - 4,078,927 (-)NCBIChiLan1.0ChiLan1.0
NDST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,918,667 - 151,986,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,936,357 - 151,986,668 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,910,993 - 145,982,933 (+)NCBIMhudiblu_PPA_v0panPan3
NDST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,580,231 - 58,639,750 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,532,148 - 58,640,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,347,429 - 58,405,535 (-)NCBI
ROS_Cfam_1.0459,061,802 - 59,119,959 (-)NCBI
UMICH_Zoey_3.1458,850,372 - 58,908,502 (-)NCBI
UNSW_CanFamBas_1.0458,966,408 - 59,022,929 (-)NCBI
UU_Cfam_GSD_1.0459,495,800 - 59,553,938 (-)NCBI
Ndst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,839,583 - 142,921,891 (-)NCBI
SpeTri2.0NW_0049365044,413,549 - 4,495,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,109,806 - 53,159,880 (+)NCBI
ChlSab1.1 Ensembl2353,123,222 - 53,155,016 (+)Ensembl
Vero_WHO_p1.0NW_02366603424,554,718 - 24,627,309 (-)NCBI
Ndst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247749,758,459 - 9,821,309 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 4 3 4 2 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000051580   ⟹   ENSSSCP00000055786
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2151,489,521 - 151,522,751 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000057924   ⟹   ENSSSCP00000033060
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2151,489,521 - 151,522,751 (+)Ensembl
RefSeq Acc Id: XM_021085023   ⟹   XP_020940682
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12151,462,321 - 151,525,909 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085024   ⟹   XP_020940683
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12151,463,228 - 151,525,909 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085025   ⟹   XP_020940684
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12151,433,925 - 151,525,909 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020940682 (Get FASTA)   NCBI Sequence Viewer  
  XP_020940683 (Get FASTA)   NCBI Sequence Viewer  
  XP_020940684 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAA74222 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020940684   ⟸   XM_021085025
- Sequence:
RefSeq Acc Id: XP_020940682   ⟸   XM_021085023
- Sequence:
RefSeq Acc Id: XP_020940683   ⟸   XM_021085024
- Sequence:
RefSeq Acc Id: ENSSSCP00000055786   ⟸   ENSSSCT00000051580
RefSeq Acc Id: ENSSSCP00000033060   ⟸   ENSSSCT00000057924
Protein Domains
HSNSD   Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032731 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070007642 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000033060 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055786 UniProtKB/TrEMBL
  ENSSSCP00070012175 UniProtKB/TrEMBL
  ENSSSCP00070012190 UniProtKB/TrEMBL
  ENSSSCP00070012200 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051580 UniProtKB/TrEMBL
  ENSSSCT00000057924 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070014737 UniProtKB/TrEMBL
  ENSSSCT00070014753 UniProtKB/TrEMBL
  ENSSSCT00070014765 UniProtKB/TrEMBL
InterPro Heparan_SO4_deacetylase UniProtKB/TrEMBL
  NST/OST UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene NDST1 ENTREZGENE
PANTHER PTHR10605 UniProtKB/TrEMBL
Pfam HSNSD UniProtKB/TrEMBL
  Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287BGX2_PIG UniProtKB/TrEMBL
  A0A4X1T814_PIG UniProtKB/TrEMBL
  A0A4X1T828_PIG UniProtKB/TrEMBL
  A0A4X1T838_PIG UniProtKB/TrEMBL
  M3V841_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90634 ENTREZGENE