H2AC6 (H2A clustered histone 6) - Rat Genome Database

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Gene: H2AC6 (H2A clustered histone 6) Sus scrofa
Analyze
No known orthologs.
Symbol: H2AC6
Name: H2A clustered histone 6
RGD ID: 14228025
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN negative regulation of cell population proliferation (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2A type 1-C; LOC110261482
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,789,769 - 20,790,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,789,150 - 20,799,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H2AC6
228 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000106179   ⟹   ENSSSCP00000080824
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl720,789,769 - 20,790,161 (+)Ensembl
RefSeq Acc Id: XM_021098432   ⟹   XP_020954091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1720,789,150 - 20,799,337 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020954091   ⟸   XM_021098432
- UniProtKB: A0A480SJY5 (UniProtKB/TrEMBL),   A0A8D1MRJ3 (UniProtKB/TrEMBL),   A0A480TC59 (UniProtKB/TrEMBL),   A0A8D1N7B7 (UniProtKB/TrEMBL),   A0A8D1UBP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080824   ⟸   ENSSSCT00000106179
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000053280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005035140 UniProtKB/TrEMBL
  ENSSSCG00015060540 UniProtKB/TrEMBL
  ENSSSCG00030047941 UniProtKB/TrEMBL
  ENSSSCG00040048162 UniProtKB/TrEMBL
  ENSSSCG00050047089 UniProtKB/TrEMBL
  ENSSSCG00050061089 UniProtKB/TrEMBL
  ENSSSCG00055026383 UniProtKB/TrEMBL
  ENSSSCG00060013025 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000106179 ENTREZGENE
  ENSSSCT00000106179.1 UniProtKB/TrEMBL
  ENSSSCT00005056052.1 UniProtKB/TrEMBL
  ENSSSCT00015080860.1 UniProtKB/TrEMBL
  ENSSSCT00030066935.1 UniProtKB/TrEMBL
  ENSSSCT00040064852.1 UniProtKB/TrEMBL
  ENSSSCT00050064135.1 UniProtKB/TrEMBL
  ENSSSCT00050083255.1 UniProtKB/TrEMBL
  ENSSSCT00055052217.1 UniProtKB/TrEMBL
  ENSSSCT00060017096.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
NCBI Gene LOC110261482 ENTREZGENE
PANTHER HISTONE H2A TYPE 1-C UniProtKB/TrEMBL
  HISTONE H2A.J UniProtKB/TrEMBL
  PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A480SJY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480TC59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MRJ3 ENTREZGENE
  A0A8D1N7B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UBP9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D1MRJ3 UniProtKB/TrEMBL
VGNC ID VGNC:109786 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2AC6  H2A clustered histone 6  LOC110261482  histone H2A type 1-C  Symbol and/or name change 19259463 PROVISIONAL