TSN (translin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TSN (translin) Sus scrofa
Analyze
Symbol: TSN
Name: translin
RGD ID: 14228009
Description: ENCODES a protein that exhibits mRNA binding (ortholog); protein-containing complex binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN RNA metabolic process (inferred); siRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoribonuclease complex (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1529,675,820 - 29,714,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11529,704,499 - 29,714,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21534,655,322 - 34,661,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1529,675,820 - 29,714,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11529,704,499 - 29,714,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21534,655,322 - 34,661,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,755,651 - 121,767,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2121,737,103 - 121,767,853 (+)EnsemblGRCh38hg38GRCh38
GRCh372122,513,227 - 122,525,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362122,229,591 - 122,241,899 (+)NCBINCBI36Build 36hg18NCBI36
Build 342122,229,350 - 122,241,659NCBI
Celera2115,837,760 - 115,850,068 (+)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2114,835,968 - 114,848,276 (+)NCBIHuRef
CHM1_12122,516,662 - 122,528,969 (+)NCBICHM1_1
T2T-CHM13v2.02122,190,928 - 122,203,130 (+)NCBIT2T-CHM13v2.0
Tsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,226,244 - 118,239,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,222,508 - 118,239,469 (-)EnsemblGRCm39 Ensembl
GRCm381118,298,514 - 118,311,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,294,778 - 118,311,739 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,195,094 - 120,207,709 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,126,063 - 120,138,678 (-)NCBIMGSCv36mm8
Celera1120,959,072 - 120,971,650 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.14NCBI
Tsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81331,917,133 - 31,930,069 (-)NCBIGRCr8
mRatBN7.21329,366,405 - 29,377,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,364,110 - 29,377,599 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1331,951,255 - 31,962,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,239,091 - 33,249,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,510,736 - 30,521,534 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,240,809 - 34,251,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,238,717 - 34,253,910 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,371,406 - 39,381,944 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41330,917,400 - 30,928,092 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11330,920,228 - 30,930,916 (-)NCBI
Celera1329,271,908 - 29,282,731 (-)NCBICelera
Cytogenetic Map13q11NCBI
Tsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,285,442 - 8,299,397 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,285,442 - 8,299,329 (-)NCBIChiLan1.0ChiLan1.0
TSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21353,871,734 - 53,883,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B53,886,154 - 53,898,647 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B38,493,248 - 38,524,502 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B122,440,668 - 122,453,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B122,440,668 - 122,453,519 (+)Ensemblpanpan1.1panPan2
TSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,467,513 - 28,476,444 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,469,463 - 28,476,313 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1928,726,460 - 28,735,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01929,833,423 - 29,842,363 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1929,833,423 - 29,842,445 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,530,686 - 28,539,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01928,701,113 - 28,710,037 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01929,881,494 - 29,890,429 (-)NCBIUU_Cfam_GSD_1.0
Tsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,633,629 - 92,644,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646948,974,834 - 48,984,079 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646948,974,836 - 48,984,097 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1108,532,033 - 8,541,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl108,528,750 - 8,541,744 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606114,161,327 - 14,173,328 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,436,949 - 23,447,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473223,436,957 - 23,447,402 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TSN
344 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 3 5 2 22 2 3 3
Low 2 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017129   ⟹   ENSSSCP00000016669
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1529,675,820 - 29,712,426 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044192   ⟹   ENSSSCP00000049341
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1529,675,820 - 29,713,085 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058214   ⟹   ENSSSCP00000031158
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1529,698,962 - 29,714,047 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085537   ⟹   ENSSSCP00000069807
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1529,707,165 - 29,714,079 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000096275   ⟹   ENSSSCP00000079962
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1529,705,161 - 29,714,036 (-)Ensembl
RefSeq Acc Id: XM_005671638   ⟹   XP_005671695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11529,704,499 - 29,714,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076421   ⟹   XP_020932080
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11529,704,502 - 29,714,064 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005671695   ⟸   XM_005671638
- Peptide Label: isoform X1
- UniProtKB: A0A286ZHZ3 (UniProtKB/TrEMBL),   A0A8D0QSX5 (UniProtKB/TrEMBL),   A0A8D0HM51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932080   ⟸   XM_021076421
- Peptide Label: isoform X2
- UniProtKB: A0A5G2R6Q4 (UniProtKB/TrEMBL),   A0A8D0XR29 (UniProtKB/TrEMBL),   A0A8D2AJ24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000031158   ⟸   ENSSSCT00000058214
RefSeq Acc Id: ENSSSCP00000049341   ⟸   ENSSSCT00000044192
RefSeq Acc Id: ENSSSCP00000069807   ⟸   ENSSSCT00000085537
RefSeq Acc Id: ENSSSCP00000016669   ⟸   ENSSSCT00000017129
RefSeq Acc Id: ENSSSCP00000079962   ⟸   ENSSSCT00000096275


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005000638 UniProtKB/TrEMBL
  ENSSSCG00015058420 UniProtKB/TrEMBL
  ENSSSCG00025007970 UniProtKB/TrEMBL
  ENSSSCG00030063158 UniProtKB/TrEMBL
  ENSSSCG00035060314 UniProtKB/TrEMBL
  ENSSSCG00040072147 UniProtKB/TrEMBL
  ENSSSCG00045008352 UniProtKB/TrEMBL
  ENSSSCG00050003994 UniProtKB/TrEMBL
  ENSSSCG00055006293 UniProtKB/TrEMBL
  ENSSSCG00060029442 UniProtKB/TrEMBL
  ENSSSCG00065078285 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017129.5 UniProtKB/TrEMBL
  ENSSSCT00000058214 ENTREZGENE
  ENSSSCT00000058214.3 UniProtKB/TrEMBL
  ENSSSCT00000085537 ENTREZGENE
  ENSSSCT00000085537.1 UniProtKB/TrEMBL
  ENSSSCT00000096275.1 UniProtKB/TrEMBL
  ENSSSCT00005001155.1 UniProtKB/TrEMBL
  ENSSSCT00015078610.1 UniProtKB/TrEMBL
  ENSSSCT00015078690.1 UniProtKB/TrEMBL
  ENSSSCT00025010601.1 UniProtKB/TrEMBL
  ENSSSCT00025010614.1 UniProtKB/TrEMBL
  ENSSSCT00030088365.1 UniProtKB/TrEMBL
  ENSSSCT00030088389.1 UniProtKB/TrEMBL
  ENSSSCT00035080892.1 UniProtKB/TrEMBL
  ENSSSCT00035080900.1 UniProtKB/TrEMBL
  ENSSSCT00040099540.1 UniProtKB/TrEMBL
  ENSSSCT00040099698.1 UniProtKB/TrEMBL
  ENSSSCT00045014096.1 UniProtKB/TrEMBL
  ENSSSCT00045014145.1 UniProtKB/TrEMBL
  ENSSSCT00050005418.1 UniProtKB/TrEMBL
  ENSSSCT00050005428.1 UniProtKB/TrEMBL
  ENSSSCT00055012254.1 UniProtKB/TrEMBL
  ENSSSCT00055012355.1 UniProtKB/TrEMBL
  ENSSSCT00060039774.1 UniProtKB/TrEMBL
  ENSSSCT00060039781.1 UniProtKB/TrEMBL
  ENSSSCT00065108415.1 UniProtKB/TrEMBL
  ENSSSCT00065108437.1 UniProtKB/TrEMBL
InterPro Translin UniProtKB/TrEMBL
  Translin_C UniProtKB/TrEMBL
  Translin_fam UniProtKB/TrEMBL
  Translin_N UniProtKB/TrEMBL
  Translin_sf UniProtKB/TrEMBL
KEGG Report ssc:100519802 UniProtKB/TrEMBL
NCBI Gene TSN ENTREZGENE
PANTHER PTHR10741 UniProtKB/TrEMBL
  PTHR10741:SF2 UniProtKB/TrEMBL
Pfam Translin UniProtKB/TrEMBL
Superfamily-SCOP SSF74784 UniProtKB/TrEMBL
UniProt A0A286ZHZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R6Q4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HM51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QSX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XR29 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2AJ24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FL76_PIG UniProtKB/TrEMBL
  F1RXY7_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287AYW6 UniProtKB/TrEMBL
VGNC ID VGNC:95556 ENTREZGENE