GHDC (GH3 domain containing) - Rat Genome Database

Name: GHDC
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: GHDC (GH3 domain containing) Sus scrofa

Analyze

Symbol:

GHDC

Name:

GH3 domain containing

RGD ID:

14227188

Description:

ENCODES a protein that exhibits indole-3-acetic acid amido synthetase activity (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GH3 domain-containing protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GHDC (GH3 domain containing)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ghdc (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ghdc (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ghdc (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GHDC (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GHDC (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ghdc (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GHDC (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ghdc (GH3 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	20,580,980 - 20,585,876 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	20,580,937 - 20,588,662 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	20,871,119 - 20,876,034 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,IEA)

endoplasmic reticulum (IEA)

membrane (IEA)

Molecular Function

acid-amino acid ligase activity (IBA)

indole-3-acetic acid amido synthetase activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

GHDC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	20,580,980 - 20,585,876 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	20,580,937 - 20,588,662 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	20,871,119 - 20,876,034 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GHDC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	42,189,087 - 42,194,494 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	42,188,799 - 42,194,513 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	40,341,105 - 40,346,512 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	37,594,632 - 37,599,739 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	36,995,332 - 37,000,777 (-)	NCBI		Celera
Cytogenetic Map	17	q21.2	NCBI
HuRef	17	36,106,217 - 36,111,662 (-)	NCBI		HuRef
CHM1_1	17	40,576,833 - 40,582,278 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	43,045,561 - 43,050,968 (-)	NCBI		T2T-CHM13v2.0

Ghdc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	100,656,852 - 100,661,772 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	100,656,858 - 100,661,783 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	100,766,026 - 100,770,973 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	100,766,032 - 100,770,957 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	100,627,646 - 100,632,271 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	100,582,422 - 100,587,047 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	101,542,865 - 101,547,490 (-)	NCBI		MGSCv36	mm8
Celera	11	111,382,894 - 111,383,470 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	63.6	NCBI

Ghdc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	86,193,920 - 86,198,141 (-)	NCBI		GRCr8
mRatBN7.2	10	85,693,612 - 85,697,833 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	85,693,616 - 85,697,865 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	90,730,106 - 90,734,321 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	90,208,965 - 90,213,181 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	85,601,844 - 85,606,065 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	88,672,834 - 88,677,055 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	88,672,843 - 88,677,055 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	88,467,004 - 88,471,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	89,703,251 - 89,707,472 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	89,718,111 - 89,720,881 (-)	NCBI
Celera	10	84,409,053 - 84,413,274 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Ghdc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	16,247,735 - 16,251,483 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	16,247,907 - 16,251,476 (-)	NCBI	ChiLan1.0	ChiLan1.0

GHDC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	22,787,880 - 22,795,069 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	24,678,010 - 24,685,226 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	15,121,279 - 15,126,992 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	15,344,193 - 15,349,426 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	15,344,799 - 15,349,426 (+)	Ensembl	panpan1.1		panPan2

GHDC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	20,724,463 - 20,729,006 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	20,725,061 - 20,735,834 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	20,185,500 - 20,190,043 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	21,443,271 - 21,447,814 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	21,443,323 - 21,447,812 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	20,228,577 - 20,233,121 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	20,495,684 - 20,500,227 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	20,598,752 - 20,603,277 (+)	NCBI		UU_Cfam_GSD_1.0

Ghdc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	20,060,422 - 20,064,764 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	17,010,328 - 17,015,184 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	17,010,375 - 17,015,460 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GHDC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	64,074,646 - 64,080,073 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	64,075,232 - 64,080,074 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	34,889,240 - 34,894,746 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ghdc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	1,740,853 - 1,744,288 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	1,740,964 - 1,744,569 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GHDC
164 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	10	3	3	5	2	22	2	3	3
Below cutoff		1				1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001246239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005668808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005668812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002336810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU570902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01050091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM241658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM241659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM241660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM241661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM241662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000018949 ⟹ ENSSSCP00000018444

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	20,580,982 - 20,585,876 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000034651 ⟹ ENSSSCP00000029449

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	20,580,980 - 20,585,876 (+)	Ensembl

RefSeq Acc Id:

NM_001246239 ⟹ NP_001233168

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,581,028 - 20,585,587 (+)	NCBI

Sequence:

show sequence

ACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTGCCTGGCGGAGGCACATTTGGGCTGTGA
CAGGTGCATGTGGGACATGGAATCACTGCTCGGGGCTCAGGGGGAGACACGATGCTGGGAGAGG
ACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGCTGAGATCCCCAGGGCCAGCCAGCTAACCAG
GGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCTTAGAGATGCTGCTGCTGCTGCTGTTCCTGC
TGTTGCTGCTACTGCCTCCACTGGTGATGCTCTGGTGGTGGCACTCCCAGGATGCCAGGCTGTC
CTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGGAGGGTCCTGTGCTGGGCAGCTGCCTGGCAG
CAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAGGCCAGAGTCAGCAGCAGGCCCTGAGATGGT
GTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCTCAGGGGGAGCACAGATATAAGCACCTTCCG
GAATCATCTTCCACTGACCAAGGCCAGCCAGGTCCAGGAGGAAGAGGGTAGGGGGCAGGTCTTG
CCCCCTACCTCAAACCAGTACTGTGGGGAGGCCTCTCTGCAGGCCACCTTGCTGGGTCTGGTAG
CGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCCGGGAGGCACAGCCCGTGTGACCCCTTCCTC
CCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCATGCCCTGGGCCAGGTGGGCCCTACCAGAGCC
AAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGAGGTCCCCAGGGCTGCGGGCCCTGGAAGCCG
GGACAGCGGTCGAGCTACTAGACGTCTTCGTGGGCCTGGAGGCCAATGGCGAAGAGCTGGCTGA
GGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTCCCTGGACGGGCAGCTGAGCTGCGGGAGGCC
CTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGCTCTGGCCCAAACTGCAGGTGGTGGTGACTC
TGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGCCCTGGGGGCCTTGTGGTGCCAAGGGTTGGC
CTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGGGTGGTGGGCCTGAGTCTGTGGCCAAAGCAG
CCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCCCCTTTATTGAGCTGCTCCCACTGAAGGAAG
GAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCTGCCCGAGGCCCAGCAGGGCAAGGAGTACGA
GTTGGTGCTGACTGACCACGCCAGCCTCACCAGGTGCCGCCTGGGTGACGTGGTCCAGGTGGTT
GGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCATCCGCAGGCTGGGCCAGACCCTGAGTGTCC
GAGGAGAAGACACTGGCGAGGACGTGTTCTCTGAGGCCCTGGGCAGGGCGGTGGGGCAGTGGCC
GGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAGAGCAGCATCCTGGATTCCTCCGAGGGCTCT
GCCCCCCACTATGAAGTGTTTGTGGCACTGAAGGGGCTGAGGAACTTGTCAGAGGAAAATCGAG
ACAAGCTTGACCACTGCCTCCAGGAAGCCTCTGCTCACTACAAGTCCCTGCGGTTCCGGGGCAG
TGTGGGCCCTGCTCAAGTCCACCTGGTGGGGCAGGGGGCCTTCAGAGCACTGCGGGCAGCCCTT
GCTCCCCGCCCCTCCTCCCCCTTCCCCCCAGAGATGCCCCGGGTCCTCAGACACAGGGAGCTGG
CCCAGATCCTGCAGAGAAGGGTGGTGTCCTGAGCCGGGGCCCACCACCCACCCCAGCCACCCTC
TCAGGCTGCTTTGCTCGTTCCTCTGGAGCCACTCTGGATGACCCTTGGCCAGGGTCTTTGTGTG
TCCCCTGACAGCTGTCCATCAGAGCCACTGGGCCTTGTGGAGGCCTTACCTGTTCTGAAGAGTT
GACTTCAGGGGTAGAGCAGACACTGGCAGCGCCCTGCCCGGAGCCCCCCAGGCCCACCCCGGAG
GACACCAGAGTTCCAATCCATGCTGATGGCGCCTGCATCT

hide sequence

RefSeq Acc Id:

XM_005668808 ⟹ XP_005668865

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,585,879 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGTCAGTGTG
GCCCCAGAGCCCTGATGTTCTCTCCTCTGCGTCTCACCTGCCTGACAGGGGTCCTGGCTTCTCG
AACCTCCATTTTAACTGATTCCCCCCAGGGGGAGGGGCGGGGGAGGAAACGGATGGTCCCCGCC
TCCTCCTCACAATCCCTCGATGCGGAGGCCTTCCTCCTCCTAGGGAGCGGCTTAGAGATGCTGC
TGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTGGTGGTGGCACTC
CCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGGAGGGTCCTGTGC
TGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAGGCCAGAGTCAGC
AGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCTCAGGGGGAGCAC
AGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTCCAGGAGGAAGAG
GGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCTCTCTGCAGGCCA
CCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCCGGGAGGCACAGC
CCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCATGCCCTGGGCCAG
GTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGAGGTCCCCAGGGC
TGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGGCCTGGAGGCCAA
TGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTCCCTGGACGGGCA
GCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGCTCTGGCCCAAAC
TGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGCCCTGGGGGCCTT
GTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGGGTGGTGGGCCTG
AGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCCCCTTTATTGAGC
TGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCTGCCCGAGGCCCA
GCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGGTGCCGCCTGGGT
GACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCATCCGCAGGCTGG
GCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGAGGCCCTGGGCAG
GGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAGAGCAGCATCCTG
GATTCCTCCGAGGGCTCTGCCCCCCACTATGAAGTGTTTGTGGCACTGAAGGGGCTGAGGAACT
TGTCAGAGGAAAATCGAGACAAGCTTGACCACTGCCTCCAGGAAGCCTCTGCTCACTACAAGTC
CCTGCGGTTCCGGGGCAGTGTGGGCCCTGCTCAAGTCCACCTGGTGGGGCAGGGGGCCTTCAGA
GCACTGCGGGCAGCCCTTGCTCCCCGCCCCTCCTCCCCCTTCCCCCCAGAGATGCCCCGGGTCC
TCAGACACAGGGAGCTGGCCCAGATCCTGCAGAGAAGGGTGGTGTCCTGAGCCGGGGCCCACCA
CCCACCCCAGCCACCCTCTCAGGCTGCTTTGCTCGTTCCTCTGGAGCCACTCTGGATGACCCTT
GGCCAGGGTCTTTGTGTGTCCCCTGACAGCTGTCCATCAGAGCCACTGGGCCTTGTGGAGGCCT
TACCTGTTCTGAAGAGTTGACTTCAGGGGTAGAGCAGACACTGGCAGCGCCCTGCCCGGAGCCC
CCCAGGCCCACCCCGGAGGACACCAGAGTTCCAATCCATGCTGATGGCGCCTGCATCTCCCAGC
CCGAGCGCTGGGCAGGCGGGAAGTGTTGGGAGTTACTGCTCCCCGGAGTTCACATCCATCAGCA
AGAACAGGAGTTGGTGAAGGCAGACCTCAGGTTCCCTGTCCCTCCGTGGGACAATCCTGAAGTG
TATTCTGTACCTTCTCTCTCGGAGGGTCCCCACCAGCTGCCCACGGTGGTGACCCTCTCATGAA
CACAGTTCTTATTGGTCTTCCTCCTGTCCCTCCCGTCCCCACTGCTTTATGTGCTTTCAAGGAT
TGCCGCCCAAATAAAACTCTTGCACCCAGA

hide sequence

RefSeq Acc Id:

XM_005668812 ⟹ XP_005668869

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,585,879 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGATTCCTCCGAGGGCTCTGCCCCCCACTATGAAGTGTTTGTGGCACTGAAGG
GGCTGAGGAACTTGTCAGAGGAAAATCGAGACAAGCTTGACCACTGCCTCCAGGAAGCCTCTGC
TCACTACAAGTCCCTGCGGTTCCGGGGCAGTGTGGGCCCTGCTCAAGTCCACCTGGTGGGGCAG
GGGGCCTTCAGAGCACTGCGGGCAGCCCTTGCTCCCCGCCCCTCCTCCCCCTTCCCCCCAGAGA
TGCCCCGGGTCCTCAGACACAGGGAGCTGGCCCAGATCCTGCAGAGAAGGGTGGTGTCCTGAGC
CGGGGCCCACCACCCACCCCAGCCACCCTCTCAGGCTGCTTTGCTCGTTCCTCTGGAGCCACTC
TGGATGACCCTTGGCCAGGGTCTTTGTGTGTCCCCTGACAGCTGTCCATCAGAGCCACTGGGCC
TTGTGGAGGCCTTACCTGTTCTGAAGAGTTGACTTCAGGGGTAGAGCAGACACTGGCAGCGCCC
TGCCCGGAGCCCCCCAGGCCCACCCCGGAGGACACCAGAGTTCCAATCCATGCTGATGGCGCCT
GCATCTCCCAGCCCGAGCGCTGGGCAGGCGGGAAGTGTTGGGAGTTACTGCTCCCCGGAGTTCA
CATCCATCAGCAAGAACAGGAGTTGGTGAAGGCAGACCTCAGGTTCCCTGTCCCTCCGTGGGAC
AATCCTGAAGTGTATTCTGTACCTTCTCTCTCGGAGGGTCCCCACCAGCTGCCCACGGTGGTGA
CCCTCTCATGAACACAGTTCTTATTGGTCTTCCTCCTGTCCCTCCCGTCCCCACTGCTTTATGT
GCTTTCAAGGATTGCCGCCCAAATAAAACTCTTGCACCCAGA

hide sequence

RefSeq Acc Id:

XM_021066127 ⟹ XP_020921786

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,588,567 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGGTTTTTCATCTTGGAAGTTGGTGGAGGAGGCAGAGGGAAGAGAGCTGGAGG
GGAGGGAGAGCCAGCTAAGAAGGCTTTTCCATGGAGGAAGAAGGTCCTGGAGTCTGAAGATTCC
TAGGTGCAAGGTGGCCTCATTAGTGCCCGGAGACCACCCCATCTCCAGGGAGCAGGCCGACAGA
CAAGGGGGGGACCCCGGGGCACAGCGATCCAACTCCAGCCTCTGAGCGCCTTGGCGGTCATTCC
TTGGGCCCAGCCTGGAGACAGCCCCCCTGCAGAAGGCTAATCTTAGACTTGCCTTTGTCTGGTC
CCAGAGTAGACGCAAGCACTCATCTCCCCACCACCACCTCAGAACCCT

hide sequence

RefSeq Acc Id:

XM_021066128 ⟹ XP_020921787

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,588,646 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGGTTTTTCATCTTGGAAGTTGGTGGAGGAGGCAGAGGGAAGAGAGCTGGAGG
GGAGGGAGAGCCAGCTAAGAAGGCTTTTCCATGGAGGAAGAAGGTCCTGGAGTCTGAAGACGCA
AGCACTCATCTCCCCACCACCACCTCAGAACCCTATAAAGCCCAGGCCCCTGGTAGCAGGTTGC
AGTTGACGGCCTCAAAGTTCCTGGCTATTCAGACCACGGAAGACGACAC

hide sequence

RefSeq Acc Id:

XM_021066129 ⟹ XP_020921788

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,588,662 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGGTTTTTCATCTTGGAAGTTGGTGGAGGAGGCAGAGGGAAGAGAGCTGGAGG
GGAGGGAGAGCCAGCTAAGAAGGCTTTTCCATGGAGGAAGAAGGTCCTGGAGTCTGAAGAGTAG
ACGCAAGCACTCATCTCCCCACCACCACCTCAGAACCCTATAAAGCCCAGGCCCCTGGTAGCAG
GTTGCAGTTGACGGCCTCAAAGTTCCTGGCTATTCAGACCACGGAAGACGACACCCTTCCTGGA
GACCCC

hide sequence

RefSeq Acc Id:

XM_021066131 ⟹ XP_020921790

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,585,199 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGCTTGACCACTGCCTCCAGGAAGCCTCTGCTCACTACAAGTCCCTGCGGTTC
CGGGGCAGTGTGGGCCCTGCTCAAGTCCACCTGGTGGGGCAGGG

hide sequence

RefSeq Acc Id:

XR_002336810

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	20,580,937 - 20,588,124 (+)	NCBI

Sequence:

show sequence

TCCCAGCACCTCCCTCAGGCCCAGCAGCCGGATTTCCCGGTCCAGGCCCAGCCCTTTAAAGTCG
TGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTGCGGGGACCCTGGGTG
CCTGGCGGAGGCACATTTGGGCTGTGACAGACAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGC
TGAGATCCCCAGGGCCAGCCAGCTAACCAGGGGCAGAGCCAGGATCCCGATTCAGGGAGCGGCT
TAGAGATGCTGCTGCTGCTGCTGTTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTG
GTGGTGGCACTCCCAGGATGCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGG
AGGGTCCTGTGCTGGGCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAG
GCCAGAGTCAGCAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCCCAGGGTCCCTGCTGTCCCCT
CAGGGGGAGCACAGATATAAGCACCTTCCGGAATCATCTTCCACTGACCAAGGCCAGCCAGGTC
CAGGAGGAAGAGGGTAGGGGGCAGGTCTTGCCCCCTACCTCAAACCAGTACTGTGGGGAGGCCT
CTCTGCAGGCCACCTTGCTGGGTCTGGTAGCGCTAAACAAGGCCTATCCAGAAGTGCTGGCTCC
GGGAGGCACAGCCCGTGTGACCCCTTCCTCCCCTTGGCCCTACCCCCTCCCCTGGCCTTGGCAT
GCCCTGGGCCAGGTGGGCCCTACCAGAGCCAAGGACCCTGGGGCTTTGCTGCTGGAGGCACTGA
GGTCCCCAGGGCTGCGGGCCCTGGAAGCCGGGACAGCGGTCGAGCTACTAGACGTCTTCGTGGG
CCTGGAGGCCAATGGCGAAGAGCTGGCTGAGGCGATAGCTGCTGGGAACCCAGGAGCGCCTCTC
CCTGGACGGGCAGCTGAGCTGCGGGAGGCCCTGGAGCAGGGACCCCGAGGGCTGGCCCTTCGGC
TCTGGCCCAAACTGCAGGTGGTGGTGACTCTGGATGCAGGAGGCCAGGCCGAGGCCGTCACTGC
CCTGGGGGCCTTGTGGTGCCAAGGGTTGGCCTTCTTCTCACCTGCTTACGCTGCCTCCGGAGGG
GTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTGGAGCCC
CCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCACCGTCCTGCT
GCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACGCCAGCCTCACCAGG
TGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGTCGTCAGGTTCA
TCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAGGAGAAGACACTGGCGAGGACGTGTTCTCTGA
GGCCCTGGGCAGGGCGGTGGGGCAGTGGCCGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAG
AGCAGCATCCTGGGTCACCTCCCCTCCTGGACTTTGGAGCTCCTTGGAAATTGGGCCATGTCCT
AGGCACACTGTCACACCAGTGTCCAGAGCAGGGCCTGGCACAGAACCGCTGCTCAGCAGATGGT
GCCCCGGATAAAAGAGGTTCTGGCCTACAGATGGCACACGTCCCTCACCCCATGCTGGCTCACT
CTGTGTGGATGGTGAGATGGGACTCCAGCCCTCCCATCCAGGCAGCCCAACCAGGTTTTTCATC
TTGGAAGTTGGTGGAGGAGGCAGAGGGAAGAGAGCTGGAGGGGAGGGAGAGCCAGCTAAGAAGG
CTTTTCCATGGAGGAAGAAGGTCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001233168	(Get FASTA)	NCBI Sequence Viewer
	XP_005668865	(Get FASTA)	NCBI Sequence Viewer
	XP_005668869	(Get FASTA)	NCBI Sequence Viewer
	XP_020921786	(Get FASTA)	NCBI Sequence Viewer
	XP_020921787	(Get FASTA)	NCBI Sequence Viewer
	XP_020921788	(Get FASTA)	NCBI Sequence Viewer
	XP_020921790	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADV78520	(Get FASTA)	NCBI Sequence Viewer
	ADV78521	(Get FASTA)	NCBI Sequence Viewer
	ADV78522	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018444
	ENSSSCP00000018444.3
	ENSSSCP00000029449
	ENSSSCP00000029449.2
	ENSSSCP00005017422.1
	ENSSSCP00025012790.1
	ENSSSCP00025012802.1
	ENSSSCP00030043484.1
	ENSSSCP00030043501.1
	ENSSSCP00035008906.1
	ENSSSCP00035008910.1
	ENSSSCP00045047052.1
	ENSSSCP00045047080.1
	ENSSSCP00050040033.1
	ENSSSCP00055046148.1
	ENSSSCP00055046181.1
	ENSSSCP00065003359.1
	ENSSSCP00065003360.1
	ENSSSCP00070023318.1
	ENSSSCP00070023336.1
	ENSSSCP00070023353.1
	ENSSSCP00070023367.1

RefSeq Acc Id:	XP_020921788 ⟸ XM_021066129
- Peptide Label:	isoform X5
- UniProtKB:	A0A8D0J2B2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILGFSSWKLVEEAEGRELEGR ESQLRRLFHGGRRSWSLKSRRKHSSPHHHLRTL hide sequence

RefSeq Acc Id:	XP_020921787 ⟸ XM_021066128
- Peptide Label:	isoform X4
- UniProtKB:	A0A8D0J2B2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILGFSSWKLVEEAEGRELEGR ESQLRRLFHGGRRSWSLKTQALISPPPPQNPIKPRPLVAGCS hide sequence

RefSeq Acc Id:	XP_020921786 ⟸ XM_021066127
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D0J2B2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILGFSSWKLVEEAEGRELEGR ESQLRRLFHGGRRSWSLKIPRCKVASLVPGDHPISREQADRQGGDPGAQRSNSSL hide sequence

RefSeq Acc Id:	XP_005668865 ⟸ XM_005668808
- Peptide Label:	isoform X1
- UniProtKB:	A0A288CFU2 (UniProtKB/TrEMBL), A0A4X1U673 (UniProtKB/TrEMBL), A0A8D0XY35 (UniProtKB/TrEMBL), A0A8D1JE13 (UniProtKB/TrEMBL), A0A8D1SAF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFSPLRLTCLTGVLASRTSILTDSPQGEGRGRKRMVPASSSQSLDAEAFLLLGSGLEMLLLLLF LLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQSQQQALR WCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASLQATLLGL VALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRSPGLRALE AGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLWPKLQVVV TLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPFIELLPLK EGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIRRLGQTLS VRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILDSSEGSAPHYEVFVALKGLRNLSEEN RDKLDHCLQEASAHYKSLRFRGSVGPAQVHLVGQGAFRALRAALAPRPSSPFPPEMPRVLRHRE LAQILQRRVVS hide sequence

RefSeq Acc Id:	XP_005668869 ⟸ XM_005668812
- Peptide Label:	isoform X2
- UniProtKB:	E9KYT5 (UniProtKB/TrEMBL), A0A4X1U658 (UniProtKB/TrEMBL), K7GNJ5 (UniProtKB/TrEMBL), F1S0Q8 (UniProtKB/TrEMBL), A0A8D1NPI0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILDSSEGSAPHYEVFVALKGL RNLSEENRDKLDHCLQEASAHYKSLRFRGSVGPAQVHLVGQGAFRALRAALAPRPSSPFPPEMP RVLRHRELAQILQRRVVS hide sequence

RefSeq Acc Id:	XP_020921790 ⟸ XM_021066131
- Peptide Label:	isoform X6
- UniProtKB:	A0A8D0J2B2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILA hide sequence

RefSeq Acc Id:	NP_001233168 ⟸ NM_001246239
- Peptide Label:	precursor
- UniProtKB:	E9KYT5 (UniProtKB/TrEMBL), A0A4X1U658 (UniProtKB/TrEMBL), K7GNJ5 (UniProtKB/TrEMBL), F1S0Q8 (UniProtKB/TrEMBL), A0A8D1NPI0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLLLFLLLLLLPPLVMLWWWHSQDARLSWLVCLQHRVAWRVLCWAAAWQQKRLEQSTLHAGQ SQQQALRWCLQRAQGPCCPLRGSTDISTFRNHLPLTKASQVQEEEGRGQVLPPTSNQYCGEASL QATLLGLVALNKAYPEVLAPGGTARVTPSSPWPYPLPWPWHALGQVGPTRAKDPGALLLEALRS PGLRALEAGTAVELLDVFVGLEANGEELAEAIAAGNPGAPLPGRAAELREALEQGPRGLALRLW PKLQVVVTLDAGGQAEAVTALGALWCQGLAFFSPAYAASGGVVGLSLWPKQPRGLYLLPPGAPF IELLPLKEGAQEDAAPTVLLPEAQQGKEYELVLTDHASLTRCRLGDVVQVVGAYNQCPVVRFIR RLGQTLSVRGEDTGEDVFSEALGRAVGQWPGAKLLDHGCVESSILDSSEGSAPHYEVFVALKGL RNLSEENRDKLDHCLQEASAHYKSLRFRGSVGPAQVHLVGQGAFRALRAALAPRPSSPFPPEMP RVLRHRELAQILQRRVVS hide sequence

RefSeq Acc Id:

ENSSSCP00000029449 ⟸ ENSSSCT00000034651

RefSeq Acc Id:

ENSSSCP00000018444 ⟸ ENSSSCT00000018949

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017407	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005017855	UniProtKB/TrEMBL
	ENSSSCG00025022136	UniProtKB/TrEMBL
	ENSSSCG00030067451	UniProtKB/TrEMBL
	ENSSSCG00035018433	UniProtKB/TrEMBL
	ENSSSCG00045038285	UniProtKB/TrEMBL
	ENSSSCG00050068027	UniProtKB/TrEMBL
	ENSSSCG00055029052	UniProtKB/TrEMBL
	ENSSSCG00065005949	UniProtKB/TrEMBL
	ENSSSCG00070014279	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018949	ENTREZGENE
	ENSSSCT00000018949.3	UniProtKB/TrEMBL
	ENSSSCT00000034651	ENTREZGENE
	ENSSSCT00000034651.4	UniProtKB/TrEMBL
	ENSSSCT00005028523.1	UniProtKB/TrEMBL
	ENSSSCT00025030124.1	UniProtKB/TrEMBL
	ENSSSCT00025030147.1	UniProtKB/TrEMBL
	ENSSSCT00030094327.1	UniProtKB/TrEMBL
	ENSSSCT00030094362.1	UniProtKB/TrEMBL
	ENSSSCT00035023816.1	UniProtKB/TrEMBL
	ENSSSCT00035023824.1	UniProtKB/TrEMBL
	ENSSSCT00045066351.1	UniProtKB/TrEMBL
	ENSSSCT00045066380.1	UniProtKB/TrEMBL
	ENSSSCT00050092831.1	UniProtKB/TrEMBL
	ENSSSCT00055057675.1	UniProtKB/TrEMBL
	ENSSSCT00055057714.1	UniProtKB/TrEMBL
	ENSSSCT00065007989.1	UniProtKB/TrEMBL
	ENSSSCT00065007998.1	UniProtKB/TrEMBL
	ENSSSCT00070028004.1	UniProtKB/TrEMBL
	ENSSSCT00070028027.1	UniProtKB/TrEMBL
	ENSSSCT00070028052.1	UniProtKB/TrEMBL
	ENSSSCT00070028070.1	UniProtKB/TrEMBL
InterPro	GH3	UniProtKB/TrEMBL
KEGG Report	ssc:100523395	UniProtKB/TrEMBL
NCBI Gene	GHDC	ENTREZGENE
PANTHER	GH3 DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR31901	UniProtKB/TrEMBL
Pfam	GH3	UniProtKB/TrEMBL
UniProt	A0A288CFU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U0Z1_PIG	UniProtKB/TrEMBL
	A0A4X1U658	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U673	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0J2B2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XY35	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1CGM4_PIG	UniProtKB/TrEMBL
	A0A8D1JE13	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JK03_PIG	UniProtKB/TrEMBL
	A0A8D1NPI0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1SAF8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1UDT2_PIG	UniProtKB/TrEMBL
	E9KYT5	ENTREZGENE, UniProtKB/TrEMBL
	F1S0Q8	ENTREZGENE
	K7GNJ5	ENTREZGENE
UniProt Secondary	F1S0Q8	UniProtKB/TrEMBL
	K7GNJ5	UniProtKB/TrEMBL
VGNC ID	VGNC:88441	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar