TRDN (triadin) - Rat Genome Database

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Gene: TRDN (triadin) Sus scrofa
Analyze
Symbol: TRDN
Name: triadin
RGD ID: 14226144
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN cytoplasmic microtubule organization (ortholog); endoplasmic reticulum membrane organization (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 1 (ortholog); catecholaminergic polymorphic ventricular tachycardia 5 (ortholog); FOUND IN calcium channel complex (ortholog); junctional membrane complex (ortholog); junctional sarcoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,180,913 - 39,567,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,180,544 - 39,567,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2143,518,886 - 43,723,161 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,180,913 - 39,567,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,180,544 - 39,567,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2143,518,886 - 43,723,161 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386123,216,339 - 123,636,950 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6123,216,339 - 123,637,189 (-)EnsemblGRCh38hg38GRCh38
GRCh376123,537,484 - 123,958,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366123,579,182 - 123,999,641 (-)NCBINCBI36Build 36hg18NCBI36
Build 346123,580,714 - 123,999,641NCBI
Celera6124,281,651 - 124,701,991 (-)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6121,115,183 - 121,535,579 (-)NCBIHuRef
CHM1_16123,801,225 - 124,221,793 (-)NCBICHM1_1
T2T-CHM13v2.06124,404,293 - 124,824,746 (-)NCBIT2T-CHM13v2.0
Trdn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391032,959,479 - 33,352,705 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1032,956,550 - 33,352,705 (+)EnsemblGRCm39 Ensembl
GRCm381033,083,483 - 33,476,709 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1033,080,554 - 33,476,709 (+)EnsemblGRCm38mm10GRCm38
MGSCv371032,803,289 - 33,196,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361032,772,897 - 32,923,408 (+)NCBIMGSCv36mm8
Celera1033,991,863 - 34,385,108 (+)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1018.37NCBI
Trdn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,774,765 - 26,230,069 (-)NCBIGRCr8
mRatBN7.2123,955,651 - 24,410,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl123,955,651 - 24,410,595 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx123,712,731 - 24,162,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,712,475 - 30,162,651 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0123,909,818 - 24,359,973 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0125,403,390 - 25,787,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl125,403,390 - 25,839,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0126,865,461 - 27,248,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4124,514,752 - 24,925,948 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1124,517,697 - 24,980,460 (-)NCBI
Celera122,661,681 - 23,059,882 (-)NCBICelera
Cytogenetic Map1p12-p11NCBI
Trdn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554364,963,945 - 5,266,727 (-)NCBIChiLan1.0ChiLan1.0
TRDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25143,213,514 - 143,630,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16141,115,209 - 141,534,159 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06121,010,234 - 121,424,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16125,133,827 - 125,546,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6125,134,433 - 125,546,537 (-)Ensemblpanpan1.1panPan2
TRDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,402,763 - 62,762,717 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl162,402,642 - 62,762,722 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha163,211,629 - 63,571,581 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0162,604,717 - 62,967,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl162,606,830 - 62,967,138 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1162,540,244 - 62,899,794 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0162,328,116 - 62,688,183 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0162,976,846 - 63,337,432 (-)NCBIUU_Cfam_GSD_1.0
LOC101962457
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946113,572,732 - 113,686,223 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936802389,653 - 637,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11350,145,787 - 50,580,397 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604022,476,403 - 22,891,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trdn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247987,780,362 - 8,018,719 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRDN
9988 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
3 4 6 2 6 8 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000029492   ⟹   ENSSSCP00000024861
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl139,180,913 - 39,339,197 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000077226   ⟹   ENSSSCP00000068792
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl139,180,932 - 39,567,240 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000089538   ⟹   ENSSSCP00000070658
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl139,228,113 - 39,339,224 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000105779   ⟹   ENSSSCP00000075201
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl139,228,113 - 39,339,224 (+)Ensembl
RefSeq Acc Id: XM_021088725   ⟹   XP_020944384
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1139,180,544 - 39,446,702 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088731   ⟹   XP_020944390
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1139,180,544 - 39,567,245 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020944390   ⟸   XM_021088731
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TBC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944384   ⟸   XM_021088725
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSSSCP00000024861   ⟸   ENSSSCT00000029492
Ensembl Acc Id: ENSSSCP00000070658   ⟸   ENSSSCT00000089538
Ensembl Acc Id: ENSSSCP00000068792   ⟸   ENSSSCT00000077226
Ensembl Acc Id: ENSSSCP00000075201   ⟸   ENSSSCT00000105779
Protein Domains
Aspartyl beta-hydroxylase/Triadin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025005292 UniProtKB/TrEMBL
  ENSSSCG00030072579 UniProtKB/TrEMBL
  ENSSSCG00035036311 UniProtKB/TrEMBL
  ENSSSCG00040049818 UniProtKB/TrEMBL
  ENSSSCG00045013113 UniProtKB/TrEMBL
  ENSSSCG00050026277 UniProtKB/TrEMBL
  ENSSSCG00055024160 UniProtKB/TrEMBL
  ENSSSCG00060000676 UniProtKB/TrEMBL
  ENSSSCG00065023046 UniProtKB/TrEMBL
  ENSSSCG00070010392 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029492.4 UniProtKB/TrEMBL
  ENSSSCT00000077226 ENTREZGENE
  ENSSSCT00000077226.1 UniProtKB/TrEMBL
  ENSSSCT00000089538.2 UniProtKB/TrEMBL
  ENSSSCT00000105779.1 UniProtKB/TrEMBL
  ENSSSCT00025007150.1 UniProtKB/TrEMBL
  ENSSSCT00025007160.1 UniProtKB/TrEMBL
  ENSSSCT00030101677.1 UniProtKB/TrEMBL
  ENSSSCT00030101701.1 UniProtKB/TrEMBL
  ENSSSCT00030101739.1 UniProtKB/TrEMBL
  ENSSSCT00035048128.1 UniProtKB/TrEMBL
  ENSSSCT00035048131.1 UniProtKB/TrEMBL
  ENSSSCT00035048141.1 UniProtKB/TrEMBL
  ENSSSCT00040067246.1 UniProtKB/TrEMBL
  ENSSSCT00040067544.1 UniProtKB/TrEMBL
  ENSSSCT00040067638.1 UniProtKB/TrEMBL
  ENSSSCT00045022371.1 UniProtKB/TrEMBL
  ENSSSCT00045022407.1 UniProtKB/TrEMBL
  ENSSSCT00045022442.1 UniProtKB/TrEMBL
  ENSSSCT00050035383.1 UniProtKB/TrEMBL
  ENSSSCT00050035394.1 UniProtKB/TrEMBL
  ENSSSCT00050035410.1 UniProtKB/TrEMBL
  ENSSSCT00055047681.1 UniProtKB/TrEMBL
  ENSSSCT00055047929.1 UniProtKB/TrEMBL
  ENSSSCT00055048065.1 UniProtKB/TrEMBL
  ENSSSCT00060000761.1 UniProtKB/TrEMBL
  ENSSSCT00060000765.1 UniProtKB/TrEMBL
  ENSSSCT00065030662.1 UniProtKB/TrEMBL
  ENSSSCT00065030667.1 UniProtKB/TrEMBL
  ENSSSCT00070020546.1 UniProtKB/TrEMBL
  ENSSSCT00070020616.1 UniProtKB/TrEMBL
  ENSSSCT00070020744.1 UniProtKB/TrEMBL
InterPro Asp-B-hydro/Triadin_dom UniProtKB/TrEMBL
  Triadin UniProtKB/TrEMBL
NCBI Gene TRDN ENTREZGENE
PANTHER PTHR14106 UniProtKB/TrEMBL
  TRIADIN UniProtKB/TrEMBL
Pfam Asp-B-Hydro_N UniProtKB/TrEMBL
UniProt A0A4X1TLS9_PIG UniProtKB/TrEMBL
  A0A5G2R0M3_PIG UniProtKB/TrEMBL
  A0A5G2R3M0_PIG UniProtKB/TrEMBL
  A0A8D0QKS4_PIG UniProtKB/TrEMBL
  A0A8D0ZJQ2_PIG UniProtKB/TrEMBL
  A0A8D1KDN2_PIG UniProtKB/TrEMBL
  A0A8D1RLI1_PIG UniProtKB/TrEMBL
  A0A8D1TBC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XWZ3_PIG UniProtKB/TrEMBL
  A0A8W4F7G1_PIG UniProtKB/TrEMBL
  I3LL94_PIG UniProtKB/TrEMBL
VGNC ID VGNC:103195 ENTREZGENE