SNAP29 (synaptosome associated protein 29) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: SNAP29 (synaptosome associated protein 29) Sus scrofa
Analyze
Symbol: SNAP29
Name: synaptosome associated protein 29
RGD ID: 14226023
Description: INVOLVED IN autophagosome maturation (ortholog); regulation of synaptic vesicle cycle (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CEDNIK syndrome (ortholog); DiGeorge syndrome (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synaptosomal-associated protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,492,154 - 50,511,456 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,492,187 - 50,511,475 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,940,923 - 53,955,920 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SNAP29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,492,154 - 50,511,456 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,492,187 - 50,511,475 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,940,923 - 53,955,920 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2220,859,007 - 20,891,214 (+)EnsemblGRCh38hg38GRCh38
GRCh382220,859,007 - 20,891,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372221,213,295 - 21,245,502 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh372221,213,292 - 21,245,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,543,292 - 19,574,109 (+)NCBINCBI36hg18NCBI36
Build 342219,537,845 - 19,568,663NCBI
Celera224,704,631 - 4,736,842 (+)NCBI
Cytogenetic Map22q11.21NCBI
HuRef224,481,433 - 4,513,635 (+)NCBIHuRef
CHM1_12221,213,478 - 21,245,708 (+)NCBICHM1_1
Snap29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,223,864 - 17,248,690 (+)NCBIGRCm39mm39
GRCm381617,406,000 - 17,430,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,405,986 - 17,430,827 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,406,093 - 17,430,919 (+)NCBIGRCm37mm9NCBIm37
MGSCv361617,319,614 - 17,344,386 (+)NCBImm8
Celera1617,978,957 - 18,003,859 (+)NCBICelera
Cytogenetic Map16A3NCBI
Snap29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,578,479 - 83,608,953 (-)NCBI
Rnor_6.0 Ensembl1187,827,651 - 87,858,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01187,827,633 - 87,858,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01190,883,352 - 90,914,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,579,141 - 85,609,842 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11185,619,738 - 85,650,439 (-)NCBI
Celera1182,342,398 - 82,372,753 (-)NCBICelera
Cytogenetic Map11q23NCBI
Snap29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,419,821 - 19,446,665 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,419,381 - 19,446,782 (-)NCBIChiLan1.0ChiLan1.0
SNAP29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12219,572,675 - 19,604,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,572,618 - 19,605,931 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0223,082,622 - 3,115,325 (+)NCBIMhudiblu_PPA_v0panPan3
SNAP29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2630,609,158 - 30,630,262 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12630,606,195 - 30,630,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Snap29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366192,377,284 - 2,402,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP29
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,797,690 - 4,827,573 (+)NCBI
ChlSab1.1 Ensembl194,797,725 - 4,830,251 (+)Ensembl
Snap29
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624945799,831 - 837,720 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 1 4 2 3 2 2 2
Low 4 2 2 1 20 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011055   ⟹   ENSSSCP00000010767
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,492,193 - 50,511,456 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062497   ⟹   ENSSSCP00000048760
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,492,154 - 50,507,144 (+)Ensembl
RefSeq Acc Id: XM_003132993   ⟹   XP_003133041
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,492,187 - 50,511,475 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003133041 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003133041   ⟸   XM_003132993
- UniProtKB: F1RKY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010767   ⟸   ENSSSCT00000011055
RefSeq Acc Id: ENSSSCP00000048760   ⟸   ENSSSCT00000062497

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010094 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000010767 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000048760 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011055 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000062497 UniProtKB/TrEMBL
InterPro T_SNARE_dom UniProtKB/TrEMBL
KEGG Report ssc:100154733 UniProtKB/TrEMBL
NCBI Gene SNAP29 ENTREZGENE
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
UniProt A0A287AXY6_PIG UniProtKB/TrEMBL
  F1RKY1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93278 ENTREZGENE