CCL11 (chemokine (C-C motif) ligand 11) - Rat Genome Database

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Gene: CCL11 (chemokine (C-C motif) ligand 11) Sus scrofa
Analyze
Symbol: CCL11
Name: chemokine (C-C motif) ligand 11
RGD ID: 14225898
Description: ENCODES a protein that exhibits chemokine activity (ortholog); INVOLVED IN actin filament organization (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); allergic conjunctivitis (ortholog); allergic disease (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eotaxin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,779,173 - 40,782,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,779,906 - 40,782,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21242,424,321 - 42,427,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,779,173 - 40,782,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,779,906 - 40,782,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21242,424,321 - 42,427,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381734,285,742 - 34,288,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1734,285,742 - 34,288,334 (+)EnsemblGRCh38hg38GRCh38
GRCh371732,612,761 - 32,615,353 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361729,636,800 - 29,639,312 (+)NCBINCBI36Build 36hg18NCBI36
Build 341729,636,799 - 29,639,312NCBI
Celera1729,522,500 - 29,525,011 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1728,797,991 - 28,800,502 (+)NCBIHuRef
CHM1_11732,676,549 - 32,679,061 (+)NCBICHM1_1
T2T-CHM13v2.01735,232,017 - 35,234,610 (+)NCBIT2T-CHM13v2.0
Ccl11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,948,658 - 81,953,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,948,649 - 81,953,781 (+)EnsemblGRCm39 Ensembl
GRCm381182,057,832 - 82,062,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,057,823 - 82,062,955 (+)EnsemblGRCm38mm10GRCm38
MGSCv371181,871,334 - 81,876,457 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361181,874,117 - 81,879,148 (+)NCBIMGSCv36mm8
Celera1191,671,281 - 91,676,404 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1149.84NCBI
Ccl11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81067,525,975 - 67,530,576 (+)NCBIGRCr8
mRatBN7.21067,028,328 - 67,032,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1067,028,328 - 67,032,926 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1071,649,521 - 71,654,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01071,154,872 - 71,159,475 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01066,615,995 - 66,620,596 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01069,434,965 - 69,439,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1069,434,941 - 69,439,575 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01069,069,783 - 69,074,384 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41070,279,161 - 70,283,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11070,292,783 - 70,297,384 (+)NCBI
Celera1065,975,844 - 65,980,445 (+)NCBICelera
Cytogenetic Map10q26NCBI
LOC100980531
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21930,175,125 - 30,195,199 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11732,056,452 - 32,076,467 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01722,495,737 - 22,515,144 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11722,806,311 - 22,808,330 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1722,806,076 - 22,808,345 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1722,787,541 - 22,791,604 (-)Ensemblpanpan1.1panPan2
LOC101968920
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560237,957,463 - 37,971,024 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936538847,464 - 848,907 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936538835,859 - 837,710 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936538835,436 - 848,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11627,792,699 - 27,796,437 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1627,794,033 - 27,796,460 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660752,223,450 - 2,226,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CCL11
152 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000019289   ⟹   ENSSSCP00000018778
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1240,779,173 - 40,782,893 (-)Ensembl
RefSeq Acc Id: NM_001256774   ⟹   NP_001243703
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11240,779,906 - 40,782,862 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001243703 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABM55707 (Get FASTA)   NCBI Sequence Viewer  
  ACN22078 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000018778
  ENSSSCP00000018778.2
  ENSSSCP00035035244.1
  ENSSSCP00040004855.1
  ENSSSCP00045021616.1
  ENSSSCP00070012876.1
RefSeq Acc Id: NP_001243703   ⟸   NM_001256774
- Peptide Label: precursor
- UniProtKB: A0A4X1T9Y7 (UniProtKB/TrEMBL),   F1S162 (UniProtKB/TrEMBL),   A0A8D1DCB4 (UniProtKB/TrEMBL),   G8XRI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000018778   ⟸   ENSSSCT00000019289

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000044762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035063005 UniProtKB/TrEMBL
  ENSSSCG00040009929 UniProtKB/TrEMBL
  ENSSSCG00045018219 UniProtKB/TrEMBL
  ENSSSCG00070008056 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019289 ENTREZGENE
  ENSSSCT00000019289.3 UniProtKB/TrEMBL
  ENSSSCT00035084721.1 UniProtKB/TrEMBL
  ENSSSCT00040012881.1 UniProtKB/TrEMBL
  ENSSSCT00045031193.1 UniProtKB/TrEMBL
  ENSSSCT00070015569.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report ssc:100038010 UniProtKB/TrEMBL
NCBI Gene CCL11 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 13 UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A4X1T9Y7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DCB4 ENTREZGENE, UniProtKB/TrEMBL
  F1S162 ENTREZGENE
  G8XRI2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1S162 UniProtKB/TrEMBL