PGM5 (phosphoglucomutase 5) - Rat Genome Database

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Gene: PGM5 (phosphoglucomutase 5) Sus scrofa
Analyze
Symbol: PGM5
Name: phosphoglucomutase 5
RGD ID: 14225816
Description: ENCODES a protein that exhibits intramolecular phosphotransferase activity (ortholog); INVOLVED IN carbohydrate metabolic process (inferred); myofibril assembly (inferred); striated muscle tissue development (inferred); ASSOCIATED WITH genetic disease (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN adherens junction (inferred); cell-substrate junction (inferred); costamere (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphoglucomutase-like protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,634,524 - 221,836,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,634,516 - 221,837,764 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,961,314 - 248,143,149 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PGM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,634,524 - 221,836,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,634,516 - 221,837,764 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,961,314 - 248,143,149 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PGM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38968,356,611 - 68,531,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl968,328,308 - 68,531,061 (+)EnsemblGRCh38hg38GRCh38
GRCh37970,971,527 - 71,145,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36970,161,635 - 70,335,797 (+)NCBINCBI36Build 36hg18NCBI36
Build 34968,201,368 - 68,374,205NCBI
Celera941,649,833 - 41,741,061 (+)NCBICelera
Celera958,816 - 59,272 (+)NCBICelera
Cytogenetic Map9q21.11NCBI
HuRef940,838,577 - 40,991,637 (+)NCBIHuRef
HuRef940,808,181 - 40,827,822 (+)NCBIHuRef
CHM1_1971,118,665 - 71,292,979 (+)NCBICHM1_1
T2T-CHM13v2.0980,530,217 - 80,704,652 (+)NCBIT2T-CHM13v2.0
Pgm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391924,655,625 - 24,839,206 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1924,660,380 - 24,839,219 (-)EnsemblGRCm39 Ensembl
GRCm381924,678,261 - 24,861,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1924,683,016 - 24,861,855 (-)EnsemblGRCm38mm10GRCm38
MGSCv371924,752,751 - 24,936,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361924,745,358 - 24,928,939 (-)NCBIMGSCv36mm8
Celera1925,445,492 - 25,631,055 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1919.78NCBI
Pgm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,752,052 - 231,939,812 (-)NCBIGRCr8
mRatBN7.21222,325,638 - 222,513,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1222,325,643 - 222,513,437 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1230,778,402 - 230,966,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,708,453 - 237,896,222 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01230,526,461 - 230,714,227 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01242,582,591 - 242,765,837 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1242,582,642 - 242,765,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,856,475 - 250,039,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,107,411 - 228,300,939 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1219,534,446 - 219,717,953 (-)NCBICelera
Cytogenetic Map1q51NCBI
Pgm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554344,489,054 - 4,670,161 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554344,489,054 - 4,670,879 (-)NCBIChiLan1.0ChiLan1.0
PGM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21167,560,634 - 67,739,039 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1967,566,574 - 67,748,940 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0956,262,870 - 56,412,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1967,208,334 - 67,293,102 (+)NCBIpanpan1.1PanPan1.1panPan2
PGM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1188,823,883 - 89,011,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl188,825,152 - 88,994,750 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha189,294,433 - 89,483,825 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0189,373,601 - 89,562,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl189,373,604 - 89,562,971 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1189,018,887 - 89,209,295 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0188,731,638 - 88,921,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0189,491,326 - 89,682,004 (-)NCBIUU_Cfam_GSD_1.0
Pgm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947136,312,786 - 136,476,727 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365034,696,467 - 4,858,561 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365034,696,473 - 4,858,561 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11279,447,917 - 79,627,895 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1279,448,227 - 79,629,813 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603867,847,124 - 68,033,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247364,599,809 - 4,804,985 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247364,599,808 - 4,804,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PGM5
5644 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 4 4 2 3
Low 5 3 1 20 2 1
Below cutoff 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005777   ⟹   ENSSSCP00000005635
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,634,524 - 221,836,456 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073718   ⟹   ENSSSCP00000062423
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,634,996 - 221,801,045 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081931   ⟹   ENSSSCP00000068205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,634,524 - 221,759,623 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097256   ⟹   ENSSSCP00000076099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,635,017 - 221,836,459 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098448   ⟹   ENSSSCP00000076963
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,634,524 - 221,800,419 (+)Ensembl
RefSeq Acc Id: XM_003121933   ⟹   XP_003121981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11221,634,516 - 221,837,764 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003121981   ⟸   XM_003121933
- UniProtKB: A0A4X1W5I4 (UniProtKB/TrEMBL),   F1SJE6 (UniProtKB/TrEMBL),   A0A8D1ETW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005635   ⟸   ENSSSCT00000005777
RefSeq Acc Id: ENSSSCP00000062423   ⟸   ENSSSCT00000073718
RefSeq Acc Id: ENSSSCP00000068205   ⟸   ENSSSCT00000081931
RefSeq Acc Id: ENSSSCP00000076099   ⟸   ENSSSCT00000097256
RefSeq Acc Id: ENSSSCP00000076963   ⟸   ENSSSCT00000098448
Protein Domains
Alpha-D-phosphohexomutase alpha/beta/alpha


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005243 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025024090 UniProtKB/TrEMBL
  ENSSSCG00035015602 UniProtKB/TrEMBL
  ENSSSCG00040047383 UniProtKB/TrEMBL
  ENSSSCG00045003451 UniProtKB/TrEMBL
  ENSSSCG00050002802 UniProtKB/TrEMBL
  ENSSSCG00055030369 UniProtKB/TrEMBL
  ENSSSCG00065008464 UniProtKB/TrEMBL
  ENSSSCG00070028978 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005777 ENTREZGENE
  ENSSSCT00000005777.5 UniProtKB/TrEMBL
  ENSSSCT00000073718.1 UniProtKB/TrEMBL
  ENSSSCT00000081931.1 UniProtKB/TrEMBL
  ENSSSCT00000097256.1 UniProtKB/TrEMBL
  ENSSSCT00000098448.1 UniProtKB/TrEMBL
  ENSSSCT00025032623.1 UniProtKB/TrEMBL
  ENSSSCT00025032702.1 UniProtKB/TrEMBL
  ENSSSCT00035019897.1 UniProtKB/TrEMBL
  ENSSSCT00035019901.1 UniProtKB/TrEMBL
  ENSSSCT00040063852.1 UniProtKB/TrEMBL
  ENSSSCT00045005662.1 UniProtKB/TrEMBL
  ENSSSCT00050003574.1 UniProtKB/TrEMBL
  ENSSSCT00050003642.1 UniProtKB/TrEMBL
  ENSSSCT00055060418.1 UniProtKB/TrEMBL
  ENSSSCT00055060423.1 UniProtKB/TrEMBL
  ENSSSCT00065011342.1 UniProtKB/TrEMBL
  ENSSSCT00065011346.1 UniProtKB/TrEMBL
  ENSSSCT00070058102.1 UniProtKB/TrEMBL
  ENSSSCT00070058103.1 UniProtKB/TrEMBL
Gene3D-CATH Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 UniProtKB/TrEMBL
  Alpha-D-phosphohexomutase, C-terminal domain UniProtKB/TrEMBL
InterPro A-D-PHexomutase_a/b/a-I UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-I/II/III UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-II UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-III UniProtKB/TrEMBL
  A-D-PHexomutase_C_sf UniProtKB/TrEMBL
  A-D-PHexomutase_CS UniProtKB/TrEMBL
  Alpha-D-phosphohexomutase_SF UniProtKB/TrEMBL
  PGM UniProtKB/TrEMBL
NCBI Gene PGM5 ENTREZGENE
PANTHER PHOSPHOGLUCOMUTASE-LIKE PROTEIN 5 UniProtKB/TrEMBL
  PTHR22573 UniProtKB/TrEMBL
Pfam PGM_PMM_I UniProtKB/TrEMBL
  PGM_PMM_II UniProtKB/TrEMBL
  PGM_PMM_III UniProtKB/TrEMBL
PRINTS PGMPMM UniProtKB/TrEMBL
PROSITE PGM_PMM UniProtKB/TrEMBL
Superfamily-SCOP SSF53738 UniProtKB/TrEMBL
  SSF55957 UniProtKB/TrEMBL
UniProt A0A4X1W5I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W700_PIG UniProtKB/TrEMBL
  A0A5G2QE37_PIG UniProtKB/TrEMBL
  A0A5G2QVN5_PIG UniProtKB/TrEMBL
  A0A8D1ETW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8T9JD93_PIG UniProtKB/TrEMBL
  A0A8W4FCH2_PIG UniProtKB/TrEMBL
  A0A8W4FCR7_PIG UniProtKB/TrEMBL
  F1SJE6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91358 ENTREZGENE