POU3F2 (POU class 3 homeobox 2) - Rat Genome Database

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Gene: POU3F2 (POU class 3 homeobox 2) Sus scrofa
Analyze
Symbol: POU3F2
Name: POU class 3 homeobox 2
RGD ID: 14225246
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); HMG box domain binding (ortholog); INVOLVED IN cellular response to organic substance (ortholog); cerebral cortex radially oriented cell migration (ortholog); epidermis development (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: POU domain, class 3, transcription factor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl165,835,995 - 65,837,323 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1165,835,375 - 65,842,872 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2174,386,105 - 74,390,348 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POU3F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl165,835,995 - 65,837,323 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1165,835,375 - 65,842,872 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2174,386,105 - 74,390,348 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POU3F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38698,834,574 - 98,839,458 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl698,834,574 - 98,839,458 (+)EnsemblGRCh38hg38GRCh38
GRCh37699,282,450 - 99,287,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36699,389,301 - 99,393,387 (+)NCBINCBI36Build 36hg18NCBI36
Build 34699,389,300 - 99,393,386NCBI
Celera699,926,767 - 99,930,852 (+)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef696,721,681 - 96,725,451 (+)NCBIHuRef
CHM1_1699,545,501 - 99,549,586 (+)NCBICHM1_1
T2T-CHM13v2.06100,008,944 - 100,013,827 (+)NCBIT2T-CHM13v2.0
Pou3f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39422,482,095 - 22,488,366 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl422,482,780 - 22,488,366 (-)EnsemblGRCm39 Ensembl
GRCm38422,482,095 - 22,488,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl422,482,780 - 22,488,366 (-)EnsemblGRCm38mm10GRCm38
MGSCv37422,413,941 - 22,415,278 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36422,577,629 - 22,578,966 (-)NCBIMGSCv36mm8
Celera422,241,121 - 22,242,061 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map49.73NCBI
Pou3f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8540,874,631 - 40,880,539 (-)NCBIGRCr8
mRatBN7.2536,077,930 - 36,083,838 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl536,077,930 - 36,083,838 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx538,207,622 - 38,213,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0539,800,219 - 39,806,116 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0539,739,886 - 39,745,785 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0536,677,452 - 36,683,356 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl536,681,528 - 36,683,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0541,323,568 - 41,325,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4537,281,880 - 37,283,708 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1537,282,058 - 37,283,887 (-)NCBI
Celera535,088,092 - 35,093,981 (-)NCBICelera
Cytogenetic Map5q21NCBI
Pou3f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541124,715,088 - 24,716,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541124,714,899 - 24,722,048 (+)NCBIChiLan1.0ChiLan1.0
POU3F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25118,883,277 - 118,887,764 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16116,764,439 - 116,768,944 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0696,677,651 - 96,682,145 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16100,558,883 - 100,564,670 (+)NCBIpanpan1.1PanPan1.1panPan2
POU3F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11257,103,712 - 57,108,522 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1256,862,028 - 56,869,251 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01257,925,134 - 57,932,364 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1257,925,422 - 57,926,753 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11257,285,124 - 57,292,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01257,128,337 - 57,135,538 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01257,373,160 - 57,380,387 (+)NCBIUU_Cfam_GSD_1.0
Pou3f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494692,038,759 - 92,044,841 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936651493,467 - 494,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936651494,182 - 497,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU3F2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11375,027,360 - 75,032,222 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1375,030,677 - 75,032,008 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604047,357,232 - 47,362,553 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pou3f2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248106,286,066 - 6,287,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248106,283,443 - 6,287,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POU3F2
133 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000100855   ⟹   ENSSSCP00000075253
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl165,835,995 - 65,837,323 (+)Ensembl
RefSeq Acc Id: XM_001926241   ⟹   XP_001926276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1165,835,375 - 65,842,872 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001926276   ⟸   XM_001926241
- UniProtKB: A0A4X1VGK5 (UniProtKB/TrEMBL),   A0A8W4F7H6 (UniProtKB/TrEMBL),   A0A8D0U0B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000075253   ⟸   ENSSSCT00000100855
Protein Domains
Homeobox   POU-specific


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000056101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000059926 ENTREZGENE
  ENSSSCG00015028848 UniProtKB/TrEMBL
  ENSSSCG00025004306 UniProtKB/TrEMBL
  ENSSSCG00030056952 UniProtKB/TrEMBL
  ENSSSCG00035079852 UniProtKB/TrEMBL
  ENSSSCG00040024799 UniProtKB/TrEMBL
  ENSSSCG00045024261 UniProtKB/TrEMBL
  ENSSSCG00050056801 UniProtKB/TrEMBL
  ENSSSCG00055004602 UniProtKB/TrEMBL
  ENSSSCG00060006710 UniProtKB/TrEMBL
  ENSSSCG00065029876 UniProtKB/TrEMBL
  ENSSSCG00070024257 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000100855 ENTREZGENE
  ENSSSCT00000100855.1 UniProtKB/TrEMBL
  ENSSSCT00015038211.1 UniProtKB/TrEMBL
  ENSSSCT00025005725.1 UniProtKB/TrEMBL
  ENSSSCT00030079382.1 UniProtKB/TrEMBL
  ENSSSCT00035109214.1 UniProtKB/TrEMBL
  ENSSSCT00040033116.1 UniProtKB/TrEMBL
  ENSSSCT00045041336.1 UniProtKB/TrEMBL
  ENSSSCT00050077431.1 UniProtKB/TrEMBL
  ENSSSCT00055009056.1 UniProtKB/TrEMBL
  ENSSSCT00060008544.1 UniProtKB/TrEMBL
  ENSSSCT00065040292.1 UniProtKB/TrEMBL
  ENSSSCT00070048450.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
  POU_dom UniProtKB/TrEMBL
  TF_POU_3 UniProtKB/TrEMBL
KEGG Report ssc:100157279 UniProtKB/TrEMBL
NCBI Gene POU3F2 ENTREZGENE
PANTHER POU DOMAIN UniProtKB/TrEMBL
  POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 2 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  Pou UniProtKB/TrEMBL
PIRSF Transcription_factor_POU UniProtKB/TrEMBL
PRINTS POUDOMAIN UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_1 UniProtKB/TrEMBL
  POU_2 UniProtKB/TrEMBL
  POU_3 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A4X1VGK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U0B8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7H6 ENTREZGENE, UniProtKB/TrEMBL