SLC30A3 (solute carrier family 30 member 3) - Rat Genome Database

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Gene: SLC30A3 (solute carrier family 30 member 3) Sus scrofa
Analyze
Symbol: SLC30A3
Name: solute carrier family 30 member 3
RGD ID: 14223207
Description: ENCODES a protein that exhibits antiporter activity (inferred); monoatomic cation transmembrane transporter activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN positive regulation of transport (ortholog); zinc ion import into lysosome (ortholog); zinc ion import into synaptic vesicle (ortholog); ASSOCIATED WITH Febrile Seizures (ortholog); genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: probable proton-coupled zinc antiporter SLC30A3; zinc transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,870,681 - 111,879,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,870,803 - 111,878,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC30A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,870,681 - 111,879,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,870,803 - 111,878,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC30A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,253,684 - 27,275,817 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,253,684 - 27,275,817 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,476,552 - 27,498,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,330,944 - 27,339,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,389,091 - 27,397,611NCBI
Celera227,323,767 - 27,332,284 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,219,146 - 27,227,667 (-)NCBIHuRef
CHM1_1227,407,345 - 27,415,865 (-)NCBICHM1_1
T2T-CHM13v2.0227,295,330 - 27,317,459 (-)NCBIT2T-CHM13v2.0
Slc30a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,243,450 - 31,265,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,243,450 - 31,265,581 (-)EnsemblGRCm39 Ensembl
GRCm38531,086,106 - 31,108,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,086,106 - 31,108,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,388,479 - 31,395,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,364,530 - 31,370,079 (-)NCBIMGSCv36mm8
Celera528,564,559 - 28,571,976 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.97NCBI
Slc30a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,984,241 - 31,004,689 (+)NCBIGRCr8
mRatBN7.2625,264,310 - 25,284,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,275,528 - 25,284,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,578,283 - 25,585,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,894,141 - 25,901,188 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,373,121 - 25,380,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,629,752 - 26,650,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,642,783 - 26,650,105 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,457,851 - 36,464,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,257,765 - 25,264,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,260,717 - 25,267,747 (+)NCBI
Celera624,768,548 - 24,775,600 (+)NCBICelera
Cytogenetic Map6q14NCBI
Slc30a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,235,104 - 9,254,964 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,235,159 - 9,254,291 (-)NCBIChiLan1.0ChiLan1.0
SLC30A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,237,770 - 99,258,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,241,738 - 99,262,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,255,944 - 27,276,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,344,045 - 27,364,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,344,045 - 27,353,543 (-)Ensemblpanpan1.1panPan2
SLC30A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,230,918 - 21,239,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,231,611 - 21,239,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,122,730 - 21,131,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,551,935 - 21,560,599 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,551,943 - 21,560,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,238,677 - 21,247,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,249,720 - 21,258,379 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,296,622 - 21,305,293 (-)NCBIUU_Cfam_GSD_1.0
Slc30a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,536,696 - 65,555,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,293,822 - 5,304,029 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,292,278 - 5,302,862 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,348,513 - 80,360,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,355,127 - 80,361,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,794,087 - 31,804,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,348,303 - 9,356,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,348,600 - 9,356,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC30A3
115 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 3
Low 1 1 1 8 2 3 1
Below cutoff 2 4

Sequence


RefSeq Acc Id: ENSSSCT00000022860   ⟹   ENSSSCP00000027016
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,870,681 - 111,879,324 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067195   ⟹   ENSSSCP00000070479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,873,714 - 111,879,325 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071868   ⟹   ENSSSCP00000073569
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,870,713 - 111,877,805 (+)Ensembl
RefSeq Acc Id: NM_001139474   ⟹   NP_001132946
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,870,803 - 111,878,234 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001132946   ⟸   NM_001139474
- UniProtKB: B6VAW3 (UniProtKB/TrEMBL),   A0A4X1TL95 (UniProtKB/TrEMBL),   A0A8D1N7I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027016   ⟸   ENSSSCT00000022860
RefSeq Acc Id: ENSSSCP00000073569   ⟸   ENSSSCT00000071868
RefSeq Acc Id: ENSSSCP00000070479   ⟸   ENSSSCT00000067195


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021534 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015043696 UniProtKB/TrEMBL
  ENSSSCG00025068666 UniProtKB/TrEMBL
  ENSSSCG00030008792 UniProtKB/TrEMBL
  ENSSSCG00035074518 UniProtKB/TrEMBL
  ENSSSCG00040072072 UniProtKB/TrEMBL
  ENSSSCG00045004010 UniProtKB/TrEMBL
  ENSSSCG00050056772 UniProtKB/TrEMBL
  ENSSSCG00055005039 UniProtKB/TrEMBL
  ENSSSCG00060075983 UniProtKB/TrEMBL
  ENSSSCG00065030452 UniProtKB/TrEMBL
  ENSSSCG00070011000 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022860 ENTREZGENE
  ENSSSCT00000022860.4 UniProtKB/TrEMBL
  ENSSSCT00000071868.2 UniProtKB/TrEMBL
  ENSSSCT00015058298.1 UniProtKB/TrEMBL
  ENSSSCT00025094347.1 UniProtKB/TrEMBL
  ENSSSCT00030011995.1 UniProtKB/TrEMBL
  ENSSSCT00035101174.1 UniProtKB/TrEMBL
  ENSSSCT00040099163.1 UniProtKB/TrEMBL
  ENSSSCT00045006682.1 UniProtKB/TrEMBL
  ENSSSCT00050077392.1 UniProtKB/TrEMBL
  ENSSSCT00055009927.1 UniProtKB/TrEMBL
  ENSSSCT00060104384.1 UniProtKB/TrEMBL
  ENSSSCT00065041141.1 UniProtKB/TrEMBL
  ENSSSCT00070021373.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_CTD_sf UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
KEGG Report ssc:100169931 UniProtKB/TrEMBL
NCBI Gene SLC30A3 ENTREZGENE
PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER UniProtKB/TrEMBL
  ZINC TRANSPORTER 3 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF160240 UniProtKB/TrEMBL
  SSF161111 UniProtKB/TrEMBL
UniProt A0A4X1TL95 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RM49_PIG UniProtKB/TrEMBL
  A0A8D1N7I3 ENTREZGENE, UniProtKB/TrEMBL
  B3GN45_PIG UniProtKB/TrEMBL
  B6VAW3 ENTREZGENE, UniProtKB/TrEMBL
  I3LSC3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93057 ENTREZGENE