GABPB1 (GA binding protein transcription factor subunit beta 1) - Rat Genome Database

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Gene: GABPB1 (GA binding protein transcription factor subunit beta 1) Sus scrofa
Analyze
Symbol: GABPB1
Name: GA binding protein transcription factor subunit beta 1
RGD ID: 14222454
Description: ENCODES a protein that exhibits transcription cis-regulatory region binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GA binding protein transcription factor beta subunit 1; GA binding protein transcription factor, alpha subunit pseudogene; GA-binding protein subunit beta-1; GABPAP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,413,506 - 121,489,806 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,053,552 - 135,129,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GABPB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,413,506 - 121,489,806 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,053,552 - 135,129,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABPB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,275,389 - 50,355,198 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,275,389 - 50,355,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371550,567,586 - 50,647,395 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361548,356,681 - 48,434,687 (-)NCBINCBI36Build 36hg18NCBI36
Build 341548,365,374 - 48,434,687NCBI
Celera1527,461,979 - 27,540,178 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1527,400,324 - 27,478,454 (-)NCBIHuRef
CHM1_11550,687,328 - 50,765,436 (-)NCBICHM1_1
T2T-CHM13v2.01548,083,628 - 48,163,356 (-)NCBIT2T-CHM13v2.0
Gabpb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,470,832 - 126,527,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,469,362 - 126,518,257 (-)EnsemblGRCm39 Ensembl
GRCm382126,628,907 - 126,684,435 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,627,442 - 126,676,337 (-)EnsemblGRCm38mm10GRCm38
MGSCv372126,454,649 - 126,501,223 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,320,354 - 126,366,928 (-)NCBIMGSCv36mm8
Celera2127,867,260 - 127,913,380 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Gabpb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,333,339 - 134,380,239 (-)NCBIGRCr8
mRatBN7.23113,879,972 - 113,924,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,879,973 - 113,923,696 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3117,763,645 - 117,808,243 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,359,180 - 126,403,776 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,019,556 - 124,064,151 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,091,739 - 119,135,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,091,744 - 119,135,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03125,617,852 - 125,661,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,153,730 - 114,197,849 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3112,722,551 - 112,766,206 (-)NCBICelera
Cytogenetic Map3q36NCBI
Gabpb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,004,480 - 4,039,681 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554093,983,857 - 4,036,433 (+)NCBIChiLan1.0ChiLan1.0
GABPB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21639,515,370 - 39,611,754 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11543,699,514 - 43,779,270 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01529,223,588 - 29,303,863 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11547,545,767 - 47,627,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1547,547,202 - 47,600,234 (-)Ensemblpanpan1.1panPan2
GABPB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,239,321 - 16,303,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,240,677 - 16,303,701 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,165,398 - 16,230,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03016,383,196 - 16,447,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,382,276 - 16,447,576 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13016,305,719 - 16,370,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,423,353 - 16,487,863 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03016,529,799 - 16,594,315 (-)NCBIUU_Cfam_GSD_1.0
Gabpb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864094,492,265 - 94,554,158 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,340,134 - 12,368,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647112,340,328 - 12,402,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABPB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12632,967,912 - 33,039,114 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,008,209 - 33,039,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048108,110,456 - 108,182,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabpb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247319,761,507 - 9,822,159 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GABPB1
679 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 5 1 1
Low 10 2 3 2 22 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000040971   ⟹   ENSSSCP00000044217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,413,727 - 121,488,162 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059948   ⟹   ENSSSCP00000046902
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,413,506 - 121,489,806 (+)Ensembl
RefSeq Acc Id: XM_001928218   ⟹   XP_001928253
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003480365   ⟹   XP_003480413
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659620   ⟹   XP_005659677
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,413,733 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013993007   ⟹   XP_013848461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,446,356 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013993008   ⟹   XP_013848462
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,278 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095667   ⟹   XP_020951326
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,446,354 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095672   ⟹   XP_020951331
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,446,356 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095676   ⟹   XP_020951335
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,446,355 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095682   ⟹   XP_020951341
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,446,354 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095701   ⟹   XP_020951360
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095723   ⟹   XP_020951382
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095726   ⟹   XP_020951385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,410,276 - 121,488,165 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020951360   ⟸   XM_021095701
- Peptide Label: isoform X7
- UniProtKB: A0A8D0LWB7 (UniProtKB/TrEMBL),   F2Z5T9 (UniProtKB/TrEMBL),   A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951382   ⟸   XM_021095723
- Peptide Label: isoform X8
- UniProtKB: A0A480V9E8 (UniProtKB/TrEMBL),   A0A4X1SSC3 (UniProtKB/TrEMBL),   A0A287ASG2 (UniProtKB/TrEMBL),   A0A8D1C2J5 (UniProtKB/TrEMBL),   A0A8D0LX63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001928253   ⟸   XM_001928218
- Peptide Label: isoform X7
- UniProtKB: F2Z5T9 (UniProtKB/TrEMBL),   A0A8D0LWB7 (UniProtKB/TrEMBL),   A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003480413   ⟸   XM_003480365
- Peptide Label: isoform X8
- UniProtKB: A0A480V9E8 (UniProtKB/TrEMBL),   A0A4X1SSC3 (UniProtKB/TrEMBL),   A0A287ASG2 (UniProtKB/TrEMBL),   A0A8D1C2J5 (UniProtKB/TrEMBL),   A0A8D0LX63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951385   ⟸   XM_021095726
- Peptide Label: isoform X9
- UniProtKB: A0A287ASG2 (UniProtKB/TrEMBL),   A0A8D1C2J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848462   ⟸   XM_013993008
- Peptide Label: isoform X7
- UniProtKB: F2Z5T9 (UniProtKB/TrEMBL),   A0A8D0LWB7 (UniProtKB/TrEMBL),   A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659677   ⟸   XM_005659620
- Peptide Label: isoform X6
- UniProtKB: A0A8D0KI49 (UniProtKB/TrEMBL),   A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951341   ⟸   XM_021095682
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020951326   ⟸   XM_021095667
- Peptide Label: isoform X2
- UniProtKB: A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951335   ⟸   XM_021095676
- Peptide Label: isoform X4
- UniProtKB: A0A287ASG2 (UniProtKB/TrEMBL),   A0A8D1C2J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848461   ⟸   XM_013993007
- Peptide Label: isoform X1
- UniProtKB: A0A8D1C2J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951331   ⟸   XM_021095672
- Peptide Label: isoform X3
- UniProtKB: A0A287ASG2 (UniProtKB/TrEMBL),   A0A8D1C2J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000044217   ⟸   ENSSSCT00000040971
RefSeq Acc Id: ENSSSCP00000046902   ⟸   ENSSSCT00000059948


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005040770 UniProtKB/TrEMBL
  ENSSSCG00015039568 UniProtKB/TrEMBL
  ENSSSCG00025017636 UniProtKB/TrEMBL
  ENSSSCG00030020902 UniProtKB/TrEMBL
  ENSSSCG00035060799 UniProtKB/TrEMBL
  ENSSSCG00040064239 UniProtKB/TrEMBL
  ENSSSCG00045013207 UniProtKB/TrEMBL
  ENSSSCG00050022347 UniProtKB/TrEMBL
  ENSSSCG00055012470 UniProtKB/TrEMBL
  ENSSSCG00060052053 UniProtKB/TrEMBL
  ENSSSCG00065060849 UniProtKB/TrEMBL
  ENSSSCG00070003734 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040971 ENTREZGENE
  ENSSSCT00000040971.2 UniProtKB/TrEMBL
  ENSSSCT00000059948 ENTREZGENE
  ENSSSCT00000059948.2 UniProtKB/TrEMBL
  ENSSSCT00005065200.1 UniProtKB/TrEMBL
  ENSSSCT00005065368.1 UniProtKB/TrEMBL
  ENSSSCT00005065388.1 UniProtKB/TrEMBL
  ENSSSCT00015052828.1 UniProtKB/TrEMBL
  ENSSSCT00025023909.1 UniProtKB/TrEMBL
  ENSSSCT00030028929.1 UniProtKB/TrEMBL
  ENSSSCT00030028948.1 UniProtKB/TrEMBL
  ENSSSCT00035081643.1 UniProtKB/TrEMBL
  ENSSSCT00040087861.1 UniProtKB/TrEMBL
  ENSSSCT00045022494.1 UniProtKB/TrEMBL
  ENSSSCT00050030133.1 UniProtKB/TrEMBL
  ENSSSCT00055024601.1 UniProtKB/TrEMBL
  ENSSSCT00055024708.1 UniProtKB/TrEMBL
  ENSSSCT00060070858.1 UniProtKB/TrEMBL
  ENSSSCT00065083389.1 UniProtKB/TrEMBL
  ENSSSCT00070006982.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report ssc:100157164 UniProtKB/TrEMBL
NCBI Gene GABPB1 ENTREZGENE
PANTHER ANKYRIN REPEAT PROTEIN UniProtKB/TrEMBL
  GA-BINDING PROTEIN SUBUNIT BETA-1 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A287AJN5_PIG UniProtKB/TrEMBL
  A0A287ASG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A480V9E8 ENTREZGENE
  A0A4X1SSC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KI49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LWB7 ENTREZGENE
  A0A8D0LX63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C2J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C2J5 ENTREZGENE, UniProtKB/TrEMBL
  F2Z5T9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480I4K3 UniProtKB/TrEMBL
  A0A480V9E8 UniProtKB/TrEMBL
  A0A8D0LWB7 UniProtKB/TrEMBL
VGNC ID VGNC:88299 ENTREZGENE