SENP1 (SUMO specific peptidase 1) - Rat Genome Database

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Gene: SENP1 (SUMO specific peptidase 1) Sus scrofa
Analyze
Symbol: SENP1
Name: SUMO specific peptidase 1
RGD ID: 14221658
Description: ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); SUMO-specific isopeptidase activity (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein desumoylation (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Neointima (ortholog); Primary Graft Dysfunction (ortholog); FOUND IN focal adhesion (inferred); nuclear membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sentrin-specific protease 1; SUMO1/sentrin specific peptidase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,419,849 - 78,476,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,597,603 - 81,650,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SENP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,419,849 - 78,476,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,597,603 - 81,650,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SENP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1248,042,897 - 48,106,079 (-)EnsemblGRCh38hg38GRCh38
GRCh381248,042,893 - 48,106,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371248,436,680 - 48,499,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,723,024 - 46,785,908 (-)NCBINCBI36hg18NCBI36
Build 341246,723,023 - 46,785,908NCBI
Celera1247,234,386 - 47,297,145 (-)NCBI
Cytogenetic Map12q13.11NCBI
HuRef1245,468,507 - 45,531,571 (-)NCBIHuRef
CHM1_11248,402,545 - 48,465,523 (-)NCBICHM1_1
Senp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,936,625 - 97,991,625 (-)NCBIGRCm39mm39
GRCm39 Ensembl1597,936,625 - 97,991,625 (-)Ensembl
GRCm381598,038,744 - 98,093,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,038,744 - 98,093,744 (-)EnsemblGRCm38mm10GRCm38
MGSCv371597,871,660 - 97,923,836 (-)NCBIGRCm37mm9NCBIm37
MGSCv361597,869,450 - 97,921,344 (-)NCBImm8
Celera15100,168,159 - 100,220,260 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.04NCBI
Senp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,163,173 - 129,226,766 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7129,165,774 - 129,221,598 (-)Ensembl
Rnor_6.07139,626,444 - 139,684,587 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,523,690 - 139,542,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,630,515 - 139,675,245 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,763,261 - 138,811,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,746,791 - 136,808,933 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17136,824,107 - 136,895,190 (-)NCBI
Celera7125,653,981 - 125,702,739 (-)NCBICelera
Cytogenetic Map7q36NCBI
Senp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,926,548 - 6,979,230 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555006,924,445 - 6,978,482 (-)NCBIChiLan1.0ChiLan1.0
SENP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11241,499,046 - 41,561,097 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,507,348 - 41,558,969 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01240,624,200 - 40,689,837 (+)NCBIMhudiblu_PPA_v0panPan3
SENP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,664,750 - 6,719,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,664,818 - 6,714,479 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2739,586,894 - 39,641,870 (-)NCBI
ROS_Cfam_1.0276,732,302 - 6,787,340 (+)NCBI
UMICH_Zoey_3.1276,669,783 - 6,724,793 (+)NCBI
UNSW_CanFamBas_1.0276,704,515 - 6,759,712 (+)NCBI
UU_Cfam_GSD_1.02739,875,502 - 39,930,468 (-)NCBI
Senp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,175,011 - 67,229,945 (+)NCBI
SpeTri2.0NW_0049365125,932,594 - 5,989,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SENP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,272,371 - 44,334,787 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037202,045,058 - 202,109,387 (+)NCBIVero_WHO_p1.0
Senp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248164,173,321 - 4,231,711 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1 5 1 1 1
Low 8 2 2 2 22 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000889   ⟹   ENSSSCP00000000870
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064113   ⟹   ENSSSCP00000056502
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065021   ⟹   ENSSSCP00000044122
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl578,423,383 - 78,476,195 (-)Ensembl
RefSeq Acc Id: XM_005664162   ⟹   XP_005664219
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,475,884 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997973   ⟹   XP_013853427
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,059 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997974   ⟹   XP_013853428
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997976   ⟹   XP_013853430
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997978   ⟹   XP_013853432
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997979   ⟹   XP_013853433
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,296 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092613   ⟹   XP_020948272
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,419,849 - 78,476,315 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002344186
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,425,892 - 78,476,040 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020948272   ⟸   XM_021092613
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013853430   ⟸   XM_013997976
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013853433   ⟸   XM_013997979
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013853428   ⟸   XM_013997974
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013853427   ⟸   XM_013997973
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013853432   ⟸   XM_013997978
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005664219   ⟸   XM_005664162
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000056502   ⟸   ENSSSCT00000064113
RefSeq Acc Id: ENSSSCP00000000870   ⟸   ENSSSCT00000000889
RefSeq Acc Id: ENSSSCP00000044122   ⟸   ENSSSCT00000065021
Protein Domains
ULP_PROTEASE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070009840 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000000870 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044122 UniProtKB/TrEMBL
  ENSSSCP00000056502 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070015917 UniProtKB/TrEMBL
  ENSSSCP00070015919 UniProtKB/TrEMBL
  ENSSSCP00070015941 UniProtKB/TrEMBL
  ENSSSCP00070015950 UniProtKB/TrEMBL
  ENSSSCP00070015958 UniProtKB/TrEMBL
  ENSSSCP00070015964 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000889 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000064113 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000065021 UniProtKB/TrEMBL
  ENSSSCT00070019151 UniProtKB/TrEMBL
  ENSSSCT00070019153 UniProtKB/TrEMBL
  ENSSSCT00070019178 UniProtKB/TrEMBL
  ENSSSCT00070019184 UniProtKB/TrEMBL
  ENSSSCT00070019194 UniProtKB/TrEMBL
  ENSSSCT00070019201 UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C48_C UniProtKB/TrEMBL
NCBI Gene SENP1 ENTREZGENE
Pfam Peptidase_C48 UniProtKB/TrEMBL
PROSITE ULP_PROTEASE UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A287AJP7_PIG UniProtKB/TrEMBL
  A0A287BK96_PIG UniProtKB/TrEMBL
  A0A4X1TH10_PIG UniProtKB/TrEMBL
  A0A4X1TH53_PIG UniProtKB/TrEMBL
  A0A4X1TIX8_PIG UniProtKB/TrEMBL
  A0A4X1TLA8_PIG UniProtKB/TrEMBL
  A0A4X1TLC2_PIG UniProtKB/TrEMBL
  F1SGU9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92712 ENTREZGENE