MIR582 (microRNA mir-582) - Rat Genome Database

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Gene: MIR582 (microRNA mir-582) Sus scrofa
Analyze
Symbol: MIR582 (Ensembl: ssc-mir-582)
Name: microRNA mir-582 (Ensembl:ssc-mir-582)
RGD ID: 14221649
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 582; ssc-mir-582
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1638,580,344 - 38,580,420 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11638,580,344 - 38,580,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21641,335,754 - 41,335,830 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:21312241   PMID:25230983  


Genomics

Comparative Map Data
MIR582
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1638,580,344 - 38,580,420 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11638,580,344 - 38,580,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21641,335,754 - 41,335,830 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIR582
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38559,703,606 - 59,703,703 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl559,703,606 - 59,703,703 (-)EnsemblGRCh38hg38GRCh38
GRCh37558,999,432 - 58,999,529 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36559,035,188 - 59,035,285 (-)NCBINCBI36Build 36hg18NCBI36
Celera555,939,701 - 55,939,798 (-)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef555,957,148 - 55,957,245 (-)NCBIHuRef
CHM1_1558,999,107 - 58,999,204 (-)NCBICHM1_1
T2T-CHM13v2.0560,521,861 - 60,521,958 (-)NCBIT2T-CHM13v2.0
Mir582
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913109,461,278 - 109,461,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13109,461,278 - 109,461,358 (+)EnsemblGRCm39 Ensembl
GRCm3813109,324,744 - 109,324,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13109,324,744 - 109,324,824 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713110,114,938 - 110,115,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera13113,648,780 - 113,648,860 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1359.87NCBI
Mir582
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8242,661,954 - 42,662,034 (+)NCBIGRCr8
mRatBN7.2240,928,571 - 40,928,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl240,928,571 - 40,928,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx248,037,984 - 48,038,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0246,096,695 - 46,096,775 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0240,949,533 - 40,949,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0240,863,750 - 40,863,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,863,750 - 40,863,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0259,928,607 - 59,928,687 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera236,763,280 - 36,763,360 (+)NCBICelera
Cytogenetic Map2q14NCBI
MIR582
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1246,497,270 - 46,497,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl246,497,270 - 46,497,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha243,573,246 - 43,573,326 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0246,981,261 - 46,981,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl246,981,261 - 46,981,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1244,044,537 - 44,044,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0244,857,823 - 44,857,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,690,769 - 45,690,849 (-)NCBIUU_Cfam_GSD_1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system nervous system
High
Medium 1
Low 4 1 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000020470
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1638,580,344 - 38,580,420 (-)Ensembl
RefSeq Acc Id: NR_128440
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11638,580,344 - 38,580,420 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018875 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020470 ENTREZGENE
miRBase MI0022154 ENTREZGENE
NCBI Gene MIR582 ENTREZGENE
RNAcentral URS0000759C53 RNACentral
  URS000075A1F0 RNACentral
  URS00007E4BD2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR582  microRNA mir-582    microRNA 582  Symbol and/or name change 5135510 APPROVED