MYOM1 (myomesin 1) - Rat Genome Database

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Gene: MYOM1 (myomesin 1) Sus scrofa
Analyze
Symbol: MYOM1
Name: myomesin 1
RGD ID: 14221240
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN extraocular skeletal muscle development (ortholog); muscle contraction (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiac arrest (ortholog); chromosome 18p deletion syndrome (ortholog); FOUND IN sarcomere (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myomesin 1, 185kDa; myomesin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,451,343 - 103,597,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16103,451,206 - 103,593,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2696,478,318 - 96,620,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
M band  (IBA,IEA)
sarcomere  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
MYOM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,451,343 - 103,597,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16103,451,206 - 103,593,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2696,478,318 - 96,620,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYOM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl183,066,807 - 3,219,968 (-)EnsemblGRCh38hg38GRCh38
GRCh38183,066,807 - 3,220,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37183,066,805 - 3,219,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,056,805 - 3,210,106 (-)NCBINCBI36hg18NCBI36
Build 34183,056,805 - 3,210,106NCBI
Celera182,942,458 - 3,099,594 (-)NCBI
Cytogenetic Map18p11.31NCBI
HuRef183,028,045 - 3,184,538 (-)NCBIHuRef
CHM1_1183,066,174 - 3,219,476 (-)NCBICHM1_1
Myom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,326,455 - 71,433,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl1771,309,628 - 71,433,851 (+)Ensembl
GRCm381771,003,332 - 71,126,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,002,633 - 71,126,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv371771,368,897 - 71,476,196 (+)NCBIGRCm37mm9NCBIm37
MGSCv361770,924,378 - 71,031,712 (+)NCBImm8
Celera1775,288,990 - 75,395,041 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
Myom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29110,916,156 - 111,039,344 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9110,915,943 - 111,039,344 (+)Ensembl
Rnor_6.09119,353,840 - 119,469,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,353,840 - 119,468,715 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,808,061 - 118,922,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,218,668 - 110,341,029 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19110,492,862 - 110,499,352 (+)NCBI
Celera9108,050,734 - 108,169,433 (+)NCBICelera
Cytogenetic Map9q38NCBI
Myom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554027,297,502 - 7,417,583 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554027,293,415 - 7,418,226 (+)NCBIChiLan1.0ChiLan1.0
MYOM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11813,368,052 - 13,523,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1813,368,052 - 13,523,834 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01811,057,733 - 11,215,998 (+)NCBIMhudiblu_PPA_v0panPan3
MYOM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,703,057 - 69,837,987 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,703,540 - 69,857,740 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,158,406 - 69,293,346 (-)NCBI
ROS_Cfam_1.0769,764,740 - 69,899,505 (-)NCBI
UMICH_Zoey_3.1769,447,603 - 69,582,520 (-)NCBI
UNSW_CanFamBas_1.0769,467,081 - 69,602,041 (-)NCBI
UU_Cfam_GSD_1.0769,765,301 - 69,900,453 (-)NCBI
Myom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494466,059,985 - 66,191,003 (-)NCBI
SpeTri2.0NW_0049366721,351,053 - 1,481,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,321,086 - 62,474,955 (-)NCBI
ChlSab1.1 Ensembl1862,320,793 - 62,465,485 (-)Ensembl
Vero_WHO_p1.0NW_02366605037,178,674 - 37,338,282 (-)NCBI
Myom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477013,239,572 - 13,356,041 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2
Low 5 1 2 11 2 3
Below cutoff 3 1 1 3 10 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004091   ⟹   ENSSSCP00000003999
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6103,451,477 - 103,593,080 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000028416   ⟹   ENSSSCP00000021846
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6103,451,379 - 103,597,324 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083461   ⟹   ENSSSCP00000068513
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6103,451,450 - 103,593,080 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088396   ⟹   ENSSSCP00000074101
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6103,451,379 - 103,597,324 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090218   ⟹   ENSSSCP00000073107
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6103,451,343 - 103,593,078 (+)Ensembl
RefSeq Acc Id: XM_003127844   ⟹   XP_003127892
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16103,451,340 - 103,593,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005665300   ⟹   XP_005665357
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16103,451,206 - 103,593,093 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127892 (Get FASTA)   NCBI Sequence Viewer  
  XP_005665357 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005665357   ⟸   XM_005665300
- Peptide Label: isoform X1
- UniProtKB: F1SM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003127892   ⟸   XM_003127844
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000074101   ⟸   ENSSSCT00000088396
RefSeq Acc Id: ENSSSCP00000068513   ⟸   ENSSSCT00000083461
RefSeq Acc Id: ENSSSCP00000073107   ⟸   ENSSSCT00000090218
RefSeq Acc Id: ENSSSCP00000003999   ⟸   ENSSSCT00000004091
RefSeq Acc Id: ENSSSCP00000021846   ⟸   ENSSSCT00000028416
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003693 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003999 UniProtKB/TrEMBL
  ENSSSCP00000021846 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000068513 UniProtKB/TrEMBL
  ENSSSCP00000073107 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000074101 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004091 UniProtKB/TrEMBL
  ENSSSCT00000028416 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000083461 UniProtKB/TrEMBL
  ENSSSCT00000088396 UniProtKB/TrEMBL
  ENSSSCT00000090218 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
KEGG Report ssc:100522496 UniProtKB/TrEMBL
NCBI Gene MYOM1 ENTREZGENE
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A480KXA1_PIG UniProtKB/TrEMBL
  A0A5G2QUK3_PIG UniProtKB/TrEMBL
  A0A5G2RCH7_PIG UniProtKB/TrEMBL
  A0A5K1VE56_PIG UniProtKB/TrEMBL
  F1SM75 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3LCR9 UniProtKB/TrEMBL
VGNC ID VGNC:90540 ENTREZGENE