C13H3orf62 (chromosome 13 C3orf62 homolog) - Rat Genome Database

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Gene: C13H3orf62 (chromosome 13 C3orf62 homolog) Sus scrofa
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Symbol: C13H3orf62
Name: chromosome 13 C3orf62 homolog
RGD ID: 14220828
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: uncharacterized protein C3orf62 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,826,945 - 31,904,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,840,281 - 31,848,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,788 - 35,079,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

Genomics

Comparative Map Data
C13H3orf62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,826,945 - 31,904,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,840,281 - 31,848,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,788 - 35,079,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C3orf62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,268,596 - 49,277,232 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,268,596 - 49,277,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,306,029 - 49,314,665 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,281,223 - 49,289,456 (-)NCBINCBI36hg18NCBI36
Celera349,269,717 - 49,277,952 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,363,351 - 49,371,827 (-)NCBIHuRef
CHM1_1349,258,841 - 49,267,310 (-)NCBICHM1_1
1700102P08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,270,023 - 108,275,416 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,270,004 - 108,288,133 (+)Ensembl
GRCm389108,392,824 - 108,411,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,392,805 - 108,410,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,295,165 - 108,300,101 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,250,929 - 108,255,858 (+)NCBImm8
Celera9108,002,041 - 108,006,978 (+)NCBICelera
Cytogenetic Map9F2NCBI
LOC498675
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,080,032 - 109,084,650 (+)NCBI
Rnor_6.0 Ensembl8117,170,620 - 117,175,235 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,170,620 - 117,175,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,518,983 - 116,523,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,382,743 - 108,387,341 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
LOC102011802
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555321,243,732 - 1,245,499 (-)NCBIChiLan1.0ChiLan1.0
C3H3orf62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,273,460 - 50,279,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBIMhudiblu_PPA_v0panPan3
C20H3orf62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,953,285 - 39,959,112 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,953,764 - 39,956,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,871,616 - 39,877,439 (+)NCBI
ROS_Cfam_1.02040,310,105 - 40,315,927 (+)NCBI
UMICH_Zoey_3.12039,677,051 - 39,682,874 (+)NCBI
UNSW_CanFamBas_1.02040,080,919 - 40,086,749 (+)NCBI
UU_Cfam_GSD_1.02040,360,345 - 40,366,176 (+)NCBI
CUNH3orf62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,174,098 - 64,180,383 (-)NCBI
SpeTri2.0NW_004936529934,641 - 940,858 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf62
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,660,873 - 10,672,712 (-)NCBI
ChlSab1.1 Ensembl2210,666,310 - 10,671,639 (-)Ensembl
CUNH3orf62
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,249,440 - 3,252,795 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 5 1 3 2 1 1
Below cutoff 3 1 2 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000050757   ⟹   ENSSSCP00000040043
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,826,945 - 31,848,482 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057843   ⟹   ENSSSCP00000037593
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,844,801 - 31,904,240 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074970   ⟹   ENSSSCP00000074255
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,842,721 - 31,904,240 (-)Ensembl
RefSeq Acc Id: XM_013981667   ⟹   XP_013837121
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,840,281 - 31,848,825 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013837121 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013837121   ⟸   XM_013981667
- Sequence:
RefSeq Acc Id: ENSSSCP00000040043   ⟸   ENSSSCT00000050757
RefSeq Acc Id: ENSSSCP00000074255   ⟸   ENSSSCT00000074970
RefSeq Acc Id: ENSSSCP00000037593   ⟸   ENSSSCT00000057843


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000037593 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040043 UniProtKB/TrEMBL
  ENSSSCP00000074255 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050757 UniProtKB/TrEMBL
  ENSSSCT00000057843 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000074970 UniProtKB/TrEMBL
InterPro DUF4712 UniProtKB/TrEMBL
KEGG Report ssc:100623171 UniProtKB/TrEMBL
NCBI Gene C13H3orf62 ENTREZGENE
PANTHER PTHR36680 UniProtKB/TrEMBL
Pfam DUF4712 UniProtKB/TrEMBL
UniProt A0A287A103_PIG UniProtKB/TrEMBL
  A0A287A7X3_PIG UniProtKB/TrEMBL
  A0A5G2RN89_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85936 ENTREZGENE