ELOVL2 (ELOVL fatty acid elongase 2) - Rat Genome Database

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Gene: ELOVL2 (ELOVL fatty acid elongase 2) Sus scrofa
Analyze
Symbol: ELOVL2
Name: ELOVL fatty acid elongase 2
RGD ID: 14220162
Description: ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (inferred); fatty acid elongase activity (inferred); transferase activity (inferred); INVOLVED IN very long-chain fatty acid metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation of very long chain fatty acids protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,651,601 - 7,774,018 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,651,707 - 7,732,353 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,976,965 - 8,025,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ELOVL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,651,601 - 7,774,018 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,651,707 - 7,732,353 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,976,965 - 8,025,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,980,759 - 11,044,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,980,759 - 11,044,305 (-)EnsemblGRCh38hg38GRCh38
GRCh37610,980,992 - 11,044,538 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36611,088,978 - 11,152,610 (-)NCBINCBI36Build 36hg18NCBI36
Build 34611,088,980 - 11,152,563NCBI
Celera612,209,434 - 12,273,087 (-)NCBICelera
Cytogenetic Map6p24.2NCBI
HuRef610,912,756 - 10,942,802 (-)NCBIHuRef
CHM1_1610,983,093 - 11,046,725 (-)NCBICHM1_1
T2T-CHM13v2.0610,848,429 - 10,911,922 (-)NCBIT2T-CHM13v2.0
Elovl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,335,858 - 41,373,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,335,857 - 41,373,881 (-)EnsemblGRCm39 Ensembl
GRCm381341,182,382 - 41,220,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,182,381 - 41,220,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv371341,277,751 - 41,315,772 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,193,473 - 41,231,367 (-)NCBIMGSCv36mm8
Celera1342,264,179 - 42,302,191 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.38NCBI
Elovl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81723,750,350 - 23,790,601 (+)NCBIGRCr8
mRatBN7.21723,544,598 - 23,584,855 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,544,568 - 23,584,848 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,413,950 - 23,454,031 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,017,637 - 25,057,488 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,354,897 - 23,394,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,382,461 - 21,422,413 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,382,455 - 21,422,407 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,366,123 - 23,405,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,492,349 - 29,532,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1723,217,076 - 23,256,130 (+)NCBICelera
Cytogenetic Map17p12NCBI
Elovl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554653,413,923 - 3,430,714 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554653,413,923 - 3,433,558 (+)NCBIChiLan1.0ChiLan1.0
ELOVL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,626,970 - 25,693,134 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,619,549 - 21,683,172 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,820,972 - 10,884,609 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1611,097,903 - 11,129,287 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl611,097,903 - 11,127,911 (-)Ensemblpanpan1.1panPan2
ELOVL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,690,534 - 10,720,374 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,693,113 - 10,720,348 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,639,692 - 10,702,198 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,792,834 - 10,855,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,792,716 - 10,855,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,623,411 - 10,685,944 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,671,754 - 10,734,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,993,503 - 12,055,868 (-)NCBIUU_Cfam_GSD_1.0
Elovl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,727,047 - 13,749,790 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,000,378 - 2,018,892 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365341,996,111 - 2,016,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,099,153 - 61,159,213 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,099,255 - 61,159,207 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604411,017,014 - 11,077,132 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elovl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475614,978,195 - 14,992,938 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475614,934,048 - 14,995,801 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ELOVL2
4513 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 4
Low 1 3 19
Below cutoff 7 4 5 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000001139   ⟹   ENSSSCP00000001116
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,652,237 - 7,762,633 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041587   ⟹   ENSSSCP00000033552
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,651,601 - 7,689,569 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000051383   ⟹   ENSSSCP00000033237
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,651,601 - 7,732,277 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056795   ⟹   ENSSSCP00000042939
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,651,601 - 7,710,669 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057115   ⟹   ENSSSCP00000048243
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,652,237 - 7,774,018 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081933   ⟹   ENSSSCP00000066732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl77,653,793 - 7,732,299 (-)Ensembl
RefSeq Acc Id: XM_021100179   ⟹   XP_020955838
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.177,651,707 - 7,732,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100180   ⟹   XP_020955839
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.177,651,707 - 7,732,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100181   ⟹   XP_020955840
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.177,651,707 - 7,732,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100182   ⟹   XP_020955841
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.177,651,707 - 7,732,264 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955838 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955839 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955840 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955841 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000001116.4
  ENSSSCP00000033237
  ENSSSCP00000033237.2
  ENSSSCP00000033552.3
  ENSSSCP00000042939
  ENSSSCP00000042939.2
  ENSSSCP00000048243.2
  ENSSSCP00005000802.1
  ENSSSCP00005000815.1
  ENSSSCP00005000819.1
  ENSSSCP00005000825.1
  ENSSSCP00005000828.1
  ENSSSCP00015003287.1
  ENSSSCP00015003292.1
  ENSSSCP00025034902.1
  ENSSSCP00025034976.1
  ENSSSCP00025035064.1
  ENSSSCP00025035133.1
  ENSSSCP00030028878.1
  ENSSSCP00030028887.1
  ENSSSCP00030028894.1
  ENSSSCP00030028912.1
  ENSSSCP00030028930.1
  ENSSSCP00035018264.1
  ENSSSCP00040036133.1
  ENSSSCP00040036175.1
  ENSSSCP00040036218.1
  ENSSSCP00040036253.1
  ENSSSCP00045016162.1
  ENSSSCP00045016173.1
  ENSSSCP00045016221.1
  ENSSSCP00050033280.1
  ENSSSCP00050033281.1
  ENSSSCP00050033288.1
  ENSSSCP00050033289.1
  ENSSSCP00050033292.1
  ENSSSCP00055023915.1
  ENSSSCP00055023978.1
  ENSSSCP00055024150.1
  ENSSSCP00060010589.1
  ENSSSCP00060010594.1
  ENSSSCP00060010596.1
  ENSSSCP00060010599.1
  ENSSSCP00060010601.1
  ENSSSCP00065012834.1
  ENSSSCP00065012837.1
  ENSSSCP00065012839.1
  ENSSSCP00065012840.1
  ENSSSCP00070001035.1
  ENSSSCP00070001038.1
RefSeq Acc Id: XP_020955839   ⟸   XM_021100180
- Peptide Label: isoform X2
- UniProtKB: A0A286ZQ06 (UniProtKB/TrEMBL),   A0A8D1HJP4 (UniProtKB/TrEMBL),   A0A286ZNS6 (UniProtKB/TrEMBL),   A0A4X1SFX0 (UniProtKB/TrEMBL),   A0A8D0HYV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955841   ⟸   XM_021100182
- Peptide Label: isoform X3
- UniProtKB: A0A8D1T5B0 (UniProtKB/TrEMBL),   A0A8D0HL95 (UniProtKB/TrEMBL),   A0A8D0HRU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955838   ⟸   XM_021100179
- Peptide Label: isoform X1
- UniProtKB: A0A8D1C9T2 (UniProtKB/TrEMBL),   A0A287AGF8 (UniProtKB/TrEMBL),   A0A8D0SPT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955840   ⟸   XM_021100181
- Peptide Label: isoform X3
- UniProtKB: A0A8D1T5B0 (UniProtKB/TrEMBL),   A0A8D0HL95 (UniProtKB/TrEMBL),   A0A8D0HRU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001116   ⟸   ENSSSCT00000001139
RefSeq Acc Id: ENSSSCP00000033552   ⟸   ENSSSCT00000041587
RefSeq Acc Id: ENSSSCP00000033237   ⟸   ENSSSCT00000051383
RefSeq Acc Id: ENSSSCP00000066732   ⟸   ENSSSCT00000081933
RefSeq Acc Id: ENSSSCP00000042939   ⟸   ENSSSCT00000056795
RefSeq Acc Id: ENSSSCP00000048243   ⟸   ENSSSCT00000057115


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005001074 UniProtKB/TrEMBL
  ENSSSCG00015006113 UniProtKB/TrEMBL
  ENSSSCG00025058420 UniProtKB/TrEMBL
  ENSSSCG00030045145 UniProtKB/TrEMBL
  ENSSSCG00035034483 UniProtKB/TrEMBL
  ENSSSCG00040060487 UniProtKB/TrEMBL
  ENSSSCG00045013691 UniProtKB/TrEMBL
  ENSSSCG00050056728 UniProtKB/TrEMBL
  ENSSSCG00055015172 UniProtKB/TrEMBL
  ENSSSCG00060018670 UniProtKB/TrEMBL
  ENSSSCG00065023572 UniProtKB/TrEMBL
  ENSSSCG00070000604 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001139.5 UniProtKB/TrEMBL
  ENSSSCT00000041587.3 UniProtKB/TrEMBL
  ENSSSCT00000051383 ENTREZGENE
  ENSSSCT00000051383.3 UniProtKB/TrEMBL
  ENSSSCT00000056795 ENTREZGENE
  ENSSSCT00000056795.3 UniProtKB/TrEMBL
  ENSSSCT00000057115.3 UniProtKB/TrEMBL
  ENSSSCT00005001550.1 UniProtKB/TrEMBL
  ENSSSCT00005001570.1 UniProtKB/TrEMBL
  ENSSSCT00005001577.1 UniProtKB/TrEMBL
  ENSSSCT00005001586.1 UniProtKB/TrEMBL
  ENSSSCT00005001590.1 UniProtKB/TrEMBL
  ENSSSCT00015008158.1 UniProtKB/TrEMBL
  ENSSSCT00015008172.1 UniProtKB/TrEMBL
  ENSSSCT00025080310.1 UniProtKB/TrEMBL
  ENSSSCT00025080466.1 UniProtKB/TrEMBL
  ENSSSCT00025080634.1 UniProtKB/TrEMBL
  ENSSSCT00025080800.1 UniProtKB/TrEMBL
  ENSSSCT00030063127.1 UniProtKB/TrEMBL
  ENSSSCT00030063145.1 UniProtKB/TrEMBL
  ENSSSCT00030063160.1 UniProtKB/TrEMBL
  ENSSSCT00030063191.1 UniProtKB/TrEMBL
  ENSSSCT00030063226.1 UniProtKB/TrEMBL
  ENSSSCT00035045700.1 UniProtKB/TrEMBL
  ENSSSCT00040082947.1 UniProtKB/TrEMBL
  ENSSSCT00040083033.1 UniProtKB/TrEMBL
  ENSSSCT00040083132.1 UniProtKB/TrEMBL
  ENSSSCT00040083220.1 UniProtKB/TrEMBL
  ENSSSCT00045023423.1 UniProtKB/TrEMBL
  ENSSSCT00045023442.1 UniProtKB/TrEMBL
  ENSSSCT00045023505.1 UniProtKB/TrEMBL
  ENSSSCT00050077338.1 UniProtKB/TrEMBL
  ENSSSCT00050077345.1 UniProtKB/TrEMBL
  ENSSSCT00050077353.1 UniProtKB/TrEMBL
  ENSSSCT00050077356.1 UniProtKB/TrEMBL
  ENSSSCT00050077362.1 UniProtKB/TrEMBL
  ENSSSCT00055030023.1 UniProtKB/TrEMBL
  ENSSSCT00055030097.1 UniProtKB/TrEMBL
  ENSSSCT00055030321.1 UniProtKB/TrEMBL
  ENSSSCT00060025108.1 UniProtKB/TrEMBL
  ENSSSCT00060025122.1 UniProtKB/TrEMBL
  ENSSSCT00060025128.1 UniProtKB/TrEMBL
  ENSSSCT00060025132.1 UniProtKB/TrEMBL
  ENSSSCT00060025136.1 UniProtKB/TrEMBL
  ENSSSCT00065031377.1 UniProtKB/TrEMBL
  ENSSSCT00065031382.1 UniProtKB/TrEMBL
  ENSSSCT00065031390.1 UniProtKB/TrEMBL
  ENSSSCT00065031393.1 UniProtKB/TrEMBL
  ENSSSCT00070001175.1 UniProtKB/TrEMBL
  ENSSSCT00070001179.1 UniProtKB/TrEMBL
InterPro ELO_CS UniProtKB/TrEMBL
  ELO_fam UniProtKB/TrEMBL
  ELOVL2 UniProtKB/TrEMBL
NCBI Gene ELOVL2 ENTREZGENE
PANTHER PTHR11157 UniProtKB/TrEMBL
  PTHR11157:SF16 UniProtKB/TrEMBL
Pfam ELO UniProtKB/TrEMBL
PROSITE ELO UniProtKB/TrEMBL
UniProt A0A286ZNS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZQ06 ENTREZGENE
  A0A287AGF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AWD3_PIG UniProtKB/TrEMBL
  A0A4X1SFX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HL95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HRU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HYV0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SPT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X324_PIG UniProtKB/TrEMBL
  A0A8D0X385_PIG UniProtKB/TrEMBL
  A0A8D0ZNJ3_PIG UniProtKB/TrEMBL
  A0A8D1C9T2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FFS9_PIG UniProtKB/TrEMBL
  A0A8D1HJP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1N7N2_PIG UniProtKB/TrEMBL
  A0A8D1T5B0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T684_PIG UniProtKB/TrEMBL
  A0A8D1TK30_PIG UniProtKB/TrEMBL
  A0A8X9AEY6_PIG UniProtKB/TrEMBL
  F1RV87_PIG UniProtKB/TrEMBL
UniProt Secondary A0A286ZQ06 UniProtKB/TrEMBL
VGNC ID VGNC:87658 ENTREZGENE