MFSD4A (major facilitator superfamily domain containing 4A) - Rat Genome Database

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Gene: MFSD4A (major facilitator superfamily domain containing 4A) Sus scrofa
Analyze
Symbol: MFSD4A
Name: major facilitator superfamily domain containing 4A
RGD ID: 14219965
Description: ENCODES a protein that exhibits glucose transmembrane transporter activity (inferred); INVOLVED IN glucose transmembrane transport (inferred); ASSOCIATED WITH autistic disorder (ortholog); cholangiocarcinoma (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: major facilitator superfamily domain-containing protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,249,678 - 66,288,338 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,249,434 - 66,292,482 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,513,292 - 72,552,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
MFSD4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,249,678 - 66,288,338 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,249,434 - 66,292,482 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,513,292 - 72,552,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MFSD4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,569,014 - 205,602,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,568,885 - 205,602,918 (+)EnsemblGRCh38hg38GRCh38
GRCh371205,538,142 - 205,572,046 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,804,785 - 203,837,960 (+)NCBINCBI36Build 36hg18NCBI36
Celera1178,673,289 - 178,707,766 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,714,441 - 176,737,884 (+)NCBIHuRef
CHM1_11206,961,383 - 206,995,329 (+)NCBICHM1_1
T2T-CHM13v2.01204,833,559 - 204,867,476 (+)NCBIT2T-CHM13v2.0
Mfsd4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,947,543 - 131,997,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,950,544 - 131,995,800 (-)EnsemblGRCm39 Ensembl
GRCm381132,022,806 - 132,069,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,022,806 - 132,068,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,923,198 - 133,964,639 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,864,330 - 133,895,479 (-)NCBIMGSCv36mm8
Celera1134,630,841 - 134,672,225 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.24NCBI
Mfsd4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,015,321 - 46,062,633 (-)NCBIGRCr8
mRatBN7.21343,469,488 - 43,510,467 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,469,488 - 43,510,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,076,334 - 46,117,632 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,364,484 - 47,405,774 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,625,349 - 44,666,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,807,720 - 48,848,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,807,720 - 48,848,997 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,877,464 - 53,918,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,908,580 - 44,949,556 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1343,806,794 - 43,848,023 (-)NCBICelera
Cytogenetic Map13q13NCBI
Mfsd4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,286,679 - 41,322,158 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,286,679 - 41,315,666 (+)NCBIChiLan1.0ChiLan1.0
MFSD4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,767,316 - 43,801,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,732,645 - 43,766,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,177,517 - 181,211,432 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,474,032 - 185,497,408 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,474,032 - 185,497,408 (+)Ensemblpanpan1.1panPan2
MFSD4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,037,365 - 2,066,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,037,026 - 2,064,696 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,130,526 - 2,159,959 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,034,209 - 2,063,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,034,196 - 2,063,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,029,526 - 2,058,956 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,421,039 - 2,450,502 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,621,246 - 2,650,726 (+)NCBIUU_Cfam_GSD_1.0
Mfsd4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,583,387 - 69,612,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,823,597 - 6,842,741 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,823,771 - 6,852,534 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFSD4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,740,916 - 23,774,514 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,743,360 - 23,774,451 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,439,913 - 24,473,523 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mfsd4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,627,194 - 5,655,222 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,627,734 - 5,655,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MFSD4A
1274 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9
Low 10 3 3 4 2 13 2 3 1
Below cutoff 1 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000026414   ⟹   ENSSSCP00000026175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl966,249,678 - 66,288,338 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000085525   ⟹   ENSSSCP00000072687
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl966,249,678 - 66,288,338 (+)Ensembl
RefSeq Acc Id: XM_003357394   ⟹   XP_003357442
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1966,249,434 - 66,292,482 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003357442   ⟸   XM_003357394
- UniProtKB: A0A8D1SAH3 (UniProtKB/TrEMBL),   I3LPZ7 (UniProtKB/TrEMBL),   A0A480JH82 (UniProtKB/TrEMBL),   A0A8D0QMU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026175   ⟸   ENSSSCT00000026414
RefSeq Acc Id: ENSSSCP00000072687   ⟸   ENSSSCT00000085525


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021487 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015028672 UniProtKB/TrEMBL
  ENSSSCG00025000909 UniProtKB/TrEMBL
  ENSSSCG00035020107 UniProtKB/TrEMBL
  ENSSSCG00045039286 UniProtKB/TrEMBL
  ENSSSCG00055030563 UniProtKB/TrEMBL
  ENSSSCG00060055452 UniProtKB/TrEMBL
  ENSSSCG00065071897 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026414 ENTREZGENE
  ENSSSCT00000026414.3 UniProtKB/TrEMBL
  ENSSSCT00000085525.1 UniProtKB/TrEMBL
  ENSSSCT00015038246.1 UniProtKB/TrEMBL
  ENSSSCT00015038284.1 UniProtKB/TrEMBL
  ENSSSCT00025001095.1 UniProtKB/TrEMBL
  ENSSSCT00035026117.1 UniProtKB/TrEMBL
  ENSSSCT00045068392.1 UniProtKB/TrEMBL
  ENSSSCT00055060903.1 UniProtKB/TrEMBL
  ENSSSCT00060075534.1 UniProtKB/TrEMBL
  ENSSSCT00065098803.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/TrEMBL
KEGG Report ssc:100626007 UniProtKB/TrEMBL
NCBI Gene MFSD4A ENTREZGENE
PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 4A UniProtKB/TrEMBL
  SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A480JH82 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RKM1_PIG UniProtKB/TrEMBL
  A0A8D0N8T7_PIG UniProtKB/TrEMBL
  A0A8D0NAN6_PIG UniProtKB/TrEMBL
  A0A8D0QMU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SAH3 ENTREZGENE, UniProtKB/TrEMBL
  I3LPZ7 ENTREZGENE
UniProt Secondary I3LPZ7 UniProtKB/TrEMBL
VGNC ID VGNC:90191 ENTREZGENE