MRPL19 (mitochondrial ribosomal protein L19) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MRPL19 (mitochondrial ribosomal protein L19) Sus scrofa
Analyze
Symbol: MRPL19
Name: mitochondrial ribosomal protein L19
RGD ID: 14219955
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytosolic large ribosomal subunit (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L19, mitochondrial; 39S ribosomal protein L19, mitochondrial-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl367,600,842 - 67,611,441 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1367,604,613 - 67,611,323 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,096,990 - 71,103,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl367,600,842 - 67,611,441 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1367,604,613 - 67,611,323 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,096,990 - 71,103,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38275,646,783 - 75,662,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl275,646,783 - 75,690,851 (+)EnsemblGRCh38hg38GRCh38
GRCh37275,873,909 - 75,889,332 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36275,727,417 - 75,742,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 34275,785,566 - 75,794,512NCBI
Celera275,705,190 - 75,720,614 (+)NCBICelera
Cytogenetic Map2p12NCBI
HuRef275,611,713 - 75,627,137 (+)NCBIHuRef
CHM1_1275,803,237 - 75,818,661 (+)NCBICHM1_1
T2T-CHM13v2.0275,656,074 - 75,671,496 (+)NCBIT2T-CHM13v2.0
Mrpl19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39681,934,807 - 81,942,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl681,934,832 - 81,942,939 (-)EnsemblGRCm39 Ensembl
GRCm38681,957,826 - 81,965,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl681,957,851 - 81,965,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37681,907,820 - 81,915,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36681,923,484 - 81,931,607 (-)NCBIMGSCv36mm8
Celera683,958,923 - 83,966,967 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.81NCBI
Mrpl19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84116,079,654 - 116,083,883 (-)NCBIGRCr8
mRatBN7.24114,521,824 - 114,526,053 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4114,521,824 - 114,526,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4119,977,599 - 119,981,829 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04115,752,779 - 115,757,009 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04114,373,009 - 114,377,239 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04112,703,041 - 112,707,270 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4112,703,041 - 112,707,270 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04177,390,795 - 177,395,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44116,207,542 - 116,211,771 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4103,520,215 - 103,524,444 (-)NCBICelera
Cytogenetic Map4q34NCBI
Mrpl19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542410,207,232 - 10,213,642 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542410,207,091 - 10,213,685 (-)NCBIChiLan1.0ChiLan1.0
MRPL19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21250,727,870 - 50,740,482 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A50,730,624 - 50,743,153 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A75,718,330 - 75,733,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A77,221,799 - 77,237,203 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A77,221,799 - 77,230,295 (+)Ensemblpanpan1.1panPan2
MRPL19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11747,690,239 - 47,696,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1747,690,228 - 47,696,978 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1747,334,163 - 47,340,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01748,553,168 - 48,559,700 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1748,552,610 - 48,559,695 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11747,568,930 - 47,575,432 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01747,633,066 - 47,639,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01748,195,682 - 48,202,210 (-)NCBIUU_Cfam_GSD_1.0
Mrpl19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062928,923,615 - 8,933,101 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365561,804,779 - 1,813,844 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365561,804,821 - 1,814,204 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11431,587,069 - 31,595,314 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604580,604,797 - 80,613,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474927,702,598 - 27,708,406 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474927,702,423 - 27,707,798 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL19
209 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000023158   ⟹   ENSSSCP00000025664
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl367,600,842 - 67,611,441 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071708   ⟹   ENSSSCP00000064268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl367,600,842 - 67,611,306 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081767   ⟹   ENSSSCP00000064045
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl367,578,565 - 67,611,302 (-)Ensembl
RefSeq Acc Id: XM_003354755   ⟹   XP_003354803
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1367,604,613 - 67,611,323 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003354803   ⟸   XM_003354755
- UniProtKB: A0A4X1W5U8 (UniProtKB/TrEMBL),   I3LNJ0 (UniProtKB/TrEMBL),   A0A8D0MLY9 (UniProtKB/TrEMBL),   A0A8D0ILV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000064268   ⟸   ENSSSCT00000071708
RefSeq Acc Id: ENSSSCP00000064045   ⟸   ENSSSCT00000081767
RefSeq Acc Id: ENSSSCP00000025664   ⟸   ENSSSCT00000023158


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021007 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014844 UniProtKB/TrEMBL
  ENSSSCG00015008511 UniProtKB/TrEMBL
  ENSSSCG00025054312 UniProtKB/TrEMBL
  ENSSSCG00030007668 UniProtKB/TrEMBL
  ENSSSCG00035009908 UniProtKB/TrEMBL
  ENSSSCG00040044838 UniProtKB/TrEMBL
  ENSSSCG00045035769 UniProtKB/TrEMBL
  ENSSSCG00050007407 UniProtKB/TrEMBL
  ENSSSCG00055013847 UniProtKB/TrEMBL
  ENSSSCG00060003579 UniProtKB/TrEMBL
  ENSSSCG00065011187 UniProtKB/TrEMBL
  ENSSSCG00070029195 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023158 ENTREZGENE
  ENSSSCT00000023158.4 UniProtKB/TrEMBL
  ENSSSCT00000071708.2 UniProtKB/TrEMBL
  ENSSSCT00005023227.1 UniProtKB/TrEMBL
  ENSSSCT00015011247.1 UniProtKB/TrEMBL
  ENSSSCT00025074345.1 UniProtKB/TrEMBL
  ENSSSCT00025074418.1 UniProtKB/TrEMBL
  ENSSSCT00030010289.1 UniProtKB/TrEMBL
  ENSSSCT00035012403.1 UniProtKB/TrEMBL
  ENSSSCT00040060223.1 UniProtKB/TrEMBL
  ENSSSCT00045061411.1 UniProtKB/TrEMBL
  ENSSSCT00045061446.1 UniProtKB/TrEMBL
  ENSSSCT00050010114.1 UniProtKB/TrEMBL
  ENSSSCT00055027338.1 UniProtKB/TrEMBL
  ENSSSCT00055027375.1 UniProtKB/TrEMBL
  ENSSSCT00060004429.1 UniProtKB/TrEMBL
  ENSSSCT00065014873.1 UniProtKB/TrEMBL
  ENSSSCT00070058589.1 UniProtKB/TrEMBL
  ENSSSCT00070058591.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.790 UniProtKB/TrEMBL
InterPro L19_sf UniProtKB/TrEMBL
  Ribosomal_L19 UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene MRPL19 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR15680 UniProtKB/TrEMBL
Pfam Ribosomal_L19 UniProtKB/TrEMBL
PRINTS RIBOSOMALL19 UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt A0A4X1W5U8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W6P0_PIG UniProtKB/TrEMBL
  A0A5G2QJX4_PIG UniProtKB/TrEMBL
  A0A8D0ILV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MLY9 ENTREZGENE, UniProtKB/TrEMBL
  I3LNJ0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90355 ENTREZGENE