VKORC1L1 (vitamin K epoxide reductase complex subunit 1 like 1) - Rat Genome Database

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Gene: VKORC1L1 (vitamin K epoxide reductase complex subunit 1 like 1) Sus scrofa
Analyze
Symbol: VKORC1L1
Name: vitamin K epoxide reductase complex subunit 1 like 1
RGD ID: 14219849
Description: ENCODES a protein that exhibits oxidoreductase activity (inferred); oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor (inferred); quinone binding (inferred); INVOLVED IN peptidyl-glutamic acid carboxylation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); prostate cancer (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vitamin K epoxide reductase complex subunit 1-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,688,898 - 16,764,251 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,691,143 - 16,764,097 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,941,581 - 17,016,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VKORC1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,688,898 - 16,764,251 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,691,143 - 16,764,097 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,941,581 - 17,016,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VKORC1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38765,865,772 - 65,959,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl765,873,074 - 65,959,563 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,338,061 - 65,424,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36764,975,692 - 65,057,237 (+)NCBINCBI36Build 36hg18NCBI36
Build 34764,782,406 - 64,863,950NCBI
Celera766,693,876 - 66,775,381 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef761,525,480 - 61,607,209 (+)NCBIHuRef
CHM1_1765,433,455 - 65,515,064 (+)NCBICHM1_1
T2T-CHM13v2.0767,087,926 - 67,181,682 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2764,675,776 - 64,757,319 (+)NCBI
Vkorc1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,970,950 - 130,015,533 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,970,811 - 130,015,533 (+)EnsemblGRCm39 Ensembl
GRCm385129,942,109 - 129,986,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,941,970 - 129,986,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,417,983 - 130,458,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365128,365,952 - 128,407,011 (+)NCBIMGSCv36mm8
MGSCv365130,226,816 - 130,267,594 (+)NCBIMGSCv36mm8
Celera5126,981,358 - 126,985,732 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Vkorc1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,354,078 - 32,404,327 (-)NCBIGRCr8
mRatBN7.21226,717,959 - 26,768,193 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,623,976 - 26,768,225 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,869,566 - 27,914,949 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,480,094 - 28,525,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,541,586 - 27,586,969 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,218,825 - 30,268,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,222,701 - 30,268,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl816,287,804 - 16,333,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0816,361,530 - 16,411,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,764,873 - 27,813,093 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,628,088 - 27,676,309 (-)NCBI
Celera1228,435,669 - 28,481,785 (-)NCBICelera
Cytogenetic Map12q12-q13NCBI
Vkorc1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,356,208 - 8,374,898 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,316,107 - 8,374,898 (+)NCBIChiLan1.0ChiLan1.0
VKORC1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2681,182,942 - 81,267,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17129,510,089 - 129,595,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0760,111,428 - 60,196,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1764,702,962 - 64,720,313 (+)NCBIpanpan1.1PanPan1.1panPan2
VKORC1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16661,690 - 728,813 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6660,365 - 725,756 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,362,342 - 2,429,440 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06467,059 - 534,229 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.16410,520 - 477,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06404,868 - 471,978 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06575,779 - 642,971 (+)NCBIUU_Cfam_GSD_1.0
Vkorc1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,282,506 - 126,302,445 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,733,367 - 7,759,582 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,733,420 - 7,775,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VKORC1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,535,346 - 1,617,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607015,030,003 - 15,110,314 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vkorc1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,322,077 - 8,388,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,322,329 - 8,388,939 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VKORC1L1
2867 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000025455   ⟹   ENSSSCP00000026258
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,688,898 - 16,764,251 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000083092   ⟹   ENSSSCP00000069894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,691,232 - 16,764,096 (-)Ensembl
RefSeq Acc Id: XM_003124445   ⟹   XP_003124493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1316,691,143 - 16,764,097 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003124493   ⟸   XM_003124445
- UniProtKB: A0A4X1SYC2 (UniProtKB/TrEMBL),   A0A5K1VIT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000026258   ⟸   ENSSSCT00000025455
Ensembl Acc Id: ENSSSCP00000069894   ⟸   ENSSSCT00000083092
Protein Domains
Vitamin K epoxide reductase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015052026 UniProtKB/TrEMBL
  ENSSSCG00025065312 UniProtKB/TrEMBL
  ENSSSCG00030062267 UniProtKB/TrEMBL
  ENSSSCG00035044088 UniProtKB/TrEMBL
  ENSSSCG00040013221 UniProtKB/TrEMBL
  ENSSSCG00045032336 UniProtKB/TrEMBL
  ENSSSCG00050066910 UniProtKB/TrEMBL
  ENSSSCG00055028418 UniProtKB/TrEMBL
  ENSSSCG00060031613 UniProtKB/TrEMBL
  ENSSSCG00065076382 UniProtKB/TrEMBL
  ENSSSCG00070005285 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025455.4 UniProtKB/TrEMBL
  ENSSSCT00000083092 ENTREZGENE
  ENSSSCT00000083092.1 UniProtKB/TrEMBL
  ENSSSCT00015069255.1 UniProtKB/TrEMBL
  ENSSSCT00025089607.1 UniProtKB/TrEMBL
  ENSSSCT00030087098.1 UniProtKB/TrEMBL
  ENSSSCT00035058578.1 UniProtKB/TrEMBL
  ENSSSCT00040017663.1 UniProtKB/TrEMBL
  ENSSSCT00045055200.1 UniProtKB/TrEMBL
  ENSSSCT00045055252.1 UniProtKB/TrEMBL
  ENSSSCT00050091162.1 UniProtKB/TrEMBL
  ENSSSCT00055056320.1 UniProtKB/TrEMBL
  ENSSSCT00060042758.1 UniProtKB/TrEMBL
  ENSSSCT00065105497.1 UniProtKB/TrEMBL
  ENSSSCT00070010029.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.130 UniProtKB/TrEMBL
InterPro VKOR UniProtKB/TrEMBL
  VKOR_sf UniProtKB/TrEMBL
  VKORC1/VKORC1L1 UniProtKB/TrEMBL
KEGG Report ssc:100518062 UniProtKB/TrEMBL
NCBI Gene VKORC1L1 ENTREZGENE
PANTHER PTHR14519 UniProtKB/TrEMBL
  VITAMIN K EPOXIDE REDUCTASE COMPLEX SUBUNIT 1-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam VKOR UniProtKB/TrEMBL
SMART VKc UniProtKB/TrEMBL
UniProt A0A4X1SYC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5K1VIT7 ENTREZGENE, UniProtKB/TrEMBL
  I3LQ80_PIG UniProtKB/TrEMBL
UniProt Secondary K9IVH7 UniProtKB/TrEMBL
VGNC ID VGNC:94831 ENTREZGENE