NMRK2 (nicotinamide riboside kinase 2) - Rat Genome Database

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Gene: NMRK2 (nicotinamide riboside kinase 2) Sus scrofa
Analyze
Symbol: NMRK2
Name: nicotinamide riboside kinase 2
RGD ID: 14219616
Description: ENCODES a protein that exhibits kinase activity (inferred); INVOLVED IN negative regulation of myoblast differentiation (inferred); PARTICIPATES IN nicotinamide adenine dinucleotide biosynthesis, the salvage pathway; ASSOCIATED WITH amenorrhea (ortholog); RASopathy (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,785,907 - 74,791,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,786,642 - 74,791,317 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,331,570 - 75,336,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
amenorrhea  (ISO)
RASopathy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NMRK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,785,907 - 74,791,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,786,642 - 74,791,317 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,331,570 - 75,336,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NMRK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,933,069 - 3,942,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,933,069 - 3,942,416 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,933,067 - 3,942,414 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,884,101 - 3,893,414 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,884,596 - 3,893,412NCBI
Celera193,870,565 - 3,879,557 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,696,838 - 3,706,107 (+)NCBIHuRef
CHM1_1193,932,706 - 3,942,091 (+)NCBICHM1_1
T2T-CHM13v2.0193,912,360 - 3,921,653 (+)NCBIT2T-CHM13v2.0
Nmrk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,034,004 - 81,037,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,034,004 - 81,037,885 (-)EnsemblGRCm39 Ensembl
GRCm381081,198,170 - 81,202,265 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,198,170 - 81,202,051 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,660,915 - 80,664,782 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,601,298 - 80,605,180 (-)NCBIMGSCv36mm8
Celera1082,218,526 - 82,222,393 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Nmrk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,165,567 - 9,168,638 (+)NCBIGRCr8
mRatBN7.278,514,855 - 8,517,916 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,514,927 - 8,517,922 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0711,382,966 - 11,386,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,383,116 - 11,386,948 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,550,492 - 11,553,583 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera76,702,775 - 6,705,979 (+)NCBICelera
Cytogenetic Map7q11NCBI
Nmrk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,749,309 - 5,756,367 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,749,303 - 5,754,889 (+)NCBIChiLan1.0ChiLan1.0
NMRK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,330,887 - 8,341,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,562,513 - 7,573,013 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,958,503 - 2,967,246 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,909,663 - 3,914,572 (+)NCBIpanpan1.1PanPan1.1panPan2
Nmrk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,600,207 - 215,605,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,231,269 - 2,234,412 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,229,869 - 2,234,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NMRK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,685,337 - 3,697,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,688,166 - 3,697,960 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,552,214 - 4,561,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmrk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,501,212 - 6,506,339 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,501,057 - 6,506,182 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NMRK2
43 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000062324   ⟹   ENSSSCP00000031121
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,785,907 - 74,791,155 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086240   ⟹   ENSSSCP00000065378
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,786,932 - 74,791,155 (-)Ensembl
RefSeq Acc Id: XM_003354004   ⟹   XP_003354052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,786,642 - 74,791,300 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005661342   ⟹   XP_005661399
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,786,642 - 74,791,317 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005661399   ⟸   XM_005661342
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003354052   ⟸   XM_003354004
- Peptide Label: isoform X1
- UniProtKB: A0A286ZHZ1 (UniProtKB/TrEMBL),   A0A4X1VMA8 (UniProtKB/TrEMBL),   A0A8D1RQE9 (UniProtKB/TrEMBL),   A0A8D0LWN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000065378   ⟸   ENSSSCT00000086240
Ensembl Acc Id: ENSSSCP00000031121   ⟸   ENSSSCT00000062324


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040860 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015032801 UniProtKB/TrEMBL
  ENSSSCG00025027925 UniProtKB/TrEMBL
  ENSSSCG00030014821 UniProtKB/TrEMBL
  ENSSSCG00035078951 UniProtKB/TrEMBL
  ENSSSCG00040046711 UniProtKB/TrEMBL
  ENSSSCG00045016951 UniProtKB/TrEMBL
  ENSSSCG00050034453 UniProtKB/TrEMBL
  ENSSSCG00055025321 UniProtKB/TrEMBL
  ENSSSCG00060010895 UniProtKB/TrEMBL
  ENSSSCG00065071325 UniProtKB/TrEMBL
  ENSSSCG00070026327 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062324 ENTREZGENE
  ENSSSCT00000062324.3 UniProtKB/TrEMBL
  ENSSSCT00000086240.1 UniProtKB/TrEMBL
  ENSSSCT00015043455.1 UniProtKB/TrEMBL
  ENSSSCT00015043631.1 UniProtKB/TrEMBL
  ENSSSCT00025037857.1 UniProtKB/TrEMBL
  ENSSSCT00025037924.1 UniProtKB/TrEMBL
  ENSSSCT00030020429.1 UniProtKB/TrEMBL
  ENSSSCT00030020452.1 UniProtKB/TrEMBL
  ENSSSCT00035107807.1 UniProtKB/TrEMBL
  ENSSSCT00035107842.1 UniProtKB/TrEMBL
  ENSSSCT00040062871.1 UniProtKB/TrEMBL
  ENSSSCT00040062927.1 UniProtKB/TrEMBL
  ENSSSCT00045028829.1 UniProtKB/TrEMBL
  ENSSSCT00045028890.1 UniProtKB/TrEMBL
  ENSSSCT00050046257.1 UniProtKB/TrEMBL
  ENSSSCT00050046263.1 UniProtKB/TrEMBL
  ENSSSCT00055050043.1 UniProtKB/TrEMBL
  ENSSSCT00055050097.1 UniProtKB/TrEMBL
  ENSSSCT00055050181.1 UniProtKB/TrEMBL
  ENSSSCT00060014189.1 UniProtKB/TrEMBL
  ENSSSCT00060014195.1 UniProtKB/TrEMBL
  ENSSSCT00060014202.1 UniProtKB/TrEMBL
  ENSSSCT00065097996.1 UniProtKB/TrEMBL
  ENSSSCT00065098010.1 UniProtKB/TrEMBL
  ENSSSCT00070052762.1 UniProtKB/TrEMBL
  ENSSSCT00070052763.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
KEGG Report ssc:100624588 UniProtKB/TrEMBL
NCBI Gene NMRK2 ENTREZGENE
PANTHER URIDINE KINASE UniProtKB/TrEMBL
Pfam AAA_18 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A286ZHZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VMA8 ENTREZGENE
  A0A4X1VSU1_PIG UniProtKB/TrEMBL
  A0A8D0LWN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NDJ4_PIG UniProtKB/TrEMBL
  A0A8D1RQE9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VMA8 UniProtKB/TrEMBL
  A0A5G2QMV4 UniProtKB/TrEMBL
VGNC ID VGNC:90801 ENTREZGENE