EIF1AD (eukaryotic translation initiation factor 1A domain containing) - Rat Genome Database

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Gene: EIF1AD (eukaryotic translation initiation factor 1A domain containing) Sus scrofa
Analyze
Symbol: EIF1AD
Name: eukaryotic translation initiation factor 1A domain containing
RGD ID: 14219439
Description: ENCODES a protein that exhibits RNA binding (inferred); translation initiation factor activity (inferred); INVOLVED IN translation (inferred); translational initiation (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable RNA-binding protein EIF1AD
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,334,197 - 6,340,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,334,882 - 6,340,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,438,839 - 5,443,814 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EIF1AD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,334,197 - 6,340,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,334,882 - 6,340,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,438,839 - 5,443,814 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF1AD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,996,545 - 66,002,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,996,545 - 66,002,176 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,764,016 - 65,769,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,520,593 - 65,526,154 (-)NCBINCBI36Build 36hg18NCBI36
Celera1163,088,432 - 63,093,993 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,090,111 - 62,095,733 (-)NCBIHuRef
CHM1_11165,648,146 - 65,653,767 (-)NCBICHM1_1
T2T-CHM13v2.01165,990,678 - 65,996,291 (-)NCBIT2T-CHM13v2.0
Eif1ad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,416,841 - 5,421,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,416,769 - 5,421,554 (+)EnsemblGRCm39 Ensembl
GRCm38195,366,813 - 5,371,518 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,366,741 - 5,371,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,366,813 - 5,371,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,366,813 - 5,371,511 (+)NCBIMGSCv36mm8
Celera195,239,138 - 5,243,840 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.31NCBI
Eif1ad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,103,715 - 212,109,015 (+)NCBIGRCr8
mRatBN7.21202,674,362 - 202,679,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,674,185 - 202,679,658 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,027,028 - 211,032,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,119,784 - 218,125,084 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,810,833 - 210,816,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,746,387 - 220,751,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,746,387 - 220,751,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,675,718 - 227,681,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,010,510 - 208,015,810 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,163,962 - 208,169,260 (+)NCBI
Celera1200,209,677 - 200,214,977 (+)NCBICelera
Cytogenetic Map1q43NCBI
Eif1ad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,339,111 - 19,345,109 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,339,111 - 19,343,673 (+)NCBIChiLan1.0ChiLan1.0
EIF1AD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,208,036 - 67,234,776 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,254,659 - 68,277,622 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,356,142 - 61,366,589 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,689,797 - 64,693,534 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,689,797 - 64,693,534 (-)Ensemblpanpan1.1panPan2
EIF1AD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,271,850 - 51,276,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,272,855 - 51,274,487 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,879,845 - 49,884,759 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,309,334 - 52,314,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,309,802 - 52,313,211 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,409,562 - 51,412,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,983,848 - 50,988,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,773,608 - 51,778,523 (+)NCBIUU_Cfam_GSD_1.0
Eif1ad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,112,840 - 7,116,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,555,273 - 3,562,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,555,273 - 3,558,443 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF1AD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,255,904 - 8,259,278 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,255,378 - 8,259,104 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,540,590 - 105,544,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif1ad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,437,053 - 20,439,796 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,436,929 - 20,439,796 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EIF1AD
59 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000023081   ⟹   ENSSSCP00000022384
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,334,197 - 6,340,112 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067795   ⟹   ENSSSCP00000063696
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,335,477 - 6,340,111 (+)Ensembl
RefSeq Acc Id: XM_003353773   ⟹   XP_003353821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,334,882 - 6,340,125 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003353774   ⟹   XP_003353822
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,335,192 - 6,340,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660674   ⟹   XP_005660731
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,335,584 - 6,340,117 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003353821   ⟸   XM_003353773
- UniProtKB: F1RU32 (UniProtKB/TrEMBL),   A0A4X1UDV5 (UniProtKB/TrEMBL),   A0A5G2QIG8 (UniProtKB/TrEMBL),   A0A8D1G1L2 (UniProtKB/TrEMBL),   A0A8D1LNL7 (UniProtKB/TrEMBL),   A0A8D1XNP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003353822   ⟸   XM_003353774
- UniProtKB: F1RU32 (UniProtKB/TrEMBL),   A0A4X1UDV5 (UniProtKB/TrEMBL),   A0A5G2QIG8 (UniProtKB/TrEMBL),   A0A8D1G1L2 (UniProtKB/TrEMBL),   A0A8D1LNL7 (UniProtKB/TrEMBL),   A0A8D1XNP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660731   ⟸   XM_005660674
- UniProtKB: F1RU32 (UniProtKB/TrEMBL),   A0A4X1UDV5 (UniProtKB/TrEMBL),   A0A5G2QIG8 (UniProtKB/TrEMBL),   A0A8D1G1L2 (UniProtKB/TrEMBL),   A0A8D1LNL7 (UniProtKB/TrEMBL),   A0A8D1XNP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000022384   ⟸   ENSSSCT00000023081
RefSeq Acc Id: ENSSSCP00000063696   ⟸   ENSSSCT00000067795
Protein Domains
S1-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005017406 UniProtKB/TrEMBL
  ENSSSCG00015064251 UniProtKB/TrEMBL
  ENSSSCG00025069378 UniProtKB/TrEMBL
  ENSSSCG00030006454 UniProtKB/TrEMBL
  ENSSSCG00035066924 UniProtKB/TrEMBL
  ENSSSCG00040069900 UniProtKB/TrEMBL
  ENSSSCG00045022698 UniProtKB/TrEMBL
  ENSSSCG00050019275 UniProtKB/TrEMBL
  ENSSSCG00055018768 UniProtKB/TrEMBL
  ENSSSCG00060074000 UniProtKB/TrEMBL
  ENSSSCG00065015718 UniProtKB/TrEMBL
  ENSSSCG00070016558 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023081 ENTREZGENE
  ENSSSCT00000023081.3 UniProtKB/TrEMBL
  ENSSSCT00000067795.1 UniProtKB/TrEMBL
  ENSSSCT00005027454.1 UniProtKB/TrEMBL
  ENSSSCT00015086136.1 UniProtKB/TrEMBL
  ENSSSCT00025095348.1 UniProtKB/TrEMBL
  ENSSSCT00025095422.1 UniProtKB/TrEMBL
  ENSSSCT00030008674.1 UniProtKB/TrEMBL
  ENSSSCT00035090502.1 UniProtKB/TrEMBL
  ENSSSCT00035090514.1 UniProtKB/TrEMBL
  ENSSSCT00040095834.1 UniProtKB/TrEMBL
  ENSSSCT00040095909.1 UniProtKB/TrEMBL
  ENSSSCT00045038762.1 UniProtKB/TrEMBL
  ENSSSCT00045038823.1 UniProtKB/TrEMBL
  ENSSSCT00050026028.1 UniProtKB/TrEMBL
  ENSSSCT00050026044.1 UniProtKB/TrEMBL
  ENSSSCT00055036722.1 UniProtKB/TrEMBL
  ENSSSCT00055036789.1 UniProtKB/TrEMBL
  ENSSSCT00060101453.1 UniProtKB/TrEMBL
  ENSSSCT00065020832.1 UniProtKB/TrEMBL
  ENSSSCT00065020836.1 UniProtKB/TrEMBL
  ENSSSCT00070032628.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.180 UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/TrEMBL
InterPro EIF1AD UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  RNA-binding_domain_S1_IF1 UniProtKB/TrEMBL
  TIF_eIF-1A UniProtKB/TrEMBL
KEGG Report ssc:100623051 UniProtKB/TrEMBL
NCBI Gene EIF1AD ENTREZGENE
PANTHER PTHR21641 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN EIF1AD-RELATED UniProtKB/TrEMBL
Pfam eIF-1a UniProtKB/TrEMBL
PROSITE S1_IF1_TYPE UniProtKB/TrEMBL
SMART eIF1a UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt A0A4X1UDV5 ENTREZGENE
  A0A5G2QIG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G1L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LNL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XNP8 ENTREZGENE, UniProtKB/TrEMBL
  F1RU32 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UDV5 UniProtKB/TrEMBL
VGNC ID VGNC:87603 ENTREZGENE