USP44 (ubiquitin specific peptidase 44) - Rat Genome Database

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Gene: USP44 (ubiquitin specific peptidase 44) Sus scrofa
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Symbol: USP44
Name: ubiquitin specific peptidase 44
RGD ID: 14219372
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); deubiquitinase activity (inferred); INVOLVED IN antiviral innate immune response (inferred); chromosome segregation (inferred); negative regulation of mitotic metaphase/anaphase transition (inferred); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 44; ubiquitin specific protease 44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl587,875,851 - 87,889,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1587,864,410 - 87,890,913 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2592,044,399 - 92,091,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
USP44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl587,875,851 - 87,889,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1587,864,410 - 87,890,913 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2592,044,399 - 92,091,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381295,516,560 - 95,551,681 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1295,516,560 - 95,551,476 (-)EnsemblGRCh38hg38GRCh38
GRCh371295,910,336 - 95,945,252 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361294,435,010 - 94,469,394 (-)NCBINCBI36Build 36hg18NCBI36
Build 341294,414,016 - 94,447,695NCBI
Celera1295,582,001 - 95,617,069 (-)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1292,978,712 - 93,013,655 (-)NCBIHuRef
CHM1_11295,875,781 - 95,910,674 (-)NCBICHM1_1
T2T-CHM13v2.01295,497,607 - 95,532,730 (-)NCBIT2T-CHM13v2.0
Usp44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391093,655,831 - 93,696,792 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1093,667,417 - 93,693,950 (+)EnsemblGRCm39 Ensembl
GRCm381093,819,969 - 93,859,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1093,831,555 - 93,858,088 (+)EnsemblGRCm38mm10GRCm38
MGSCv371093,294,300 - 93,311,283 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361093,261,354 - 93,278,337 (+)NCBIMGSCv36mm8
Celera1095,801,275 - 95,819,046 (+)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1048.67NCBI
Usp44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8730,251,142 - 30,301,185 (+)NCBIGRCr8
mRatBN7.2728,364,169 - 28,412,039 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl728,364,033 - 28,410,053 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx730,354,579 - 30,400,607 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0732,516,806 - 32,562,843 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0732,294,256 - 32,340,284 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0734,714,293 - 34,759,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl734,744,483 - 34,759,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0734,773,627 - 34,818,325 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4730,898,472 - 30,971,342 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1730,965,952 - 30,991,469 (+)NCBI
Celera725,461,222 - 25,507,052 (+)NCBICelera
Cytogenetic Map7q13NCBI
Usp44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540531,977,602 - 32,006,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540531,977,045 - 32,006,733 (-)NCBIChiLan1.0ChiLan1.0
USP44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210103,592,727 - 103,628,336 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112103,589,117 - 103,624,726 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01293,111,293 - 93,146,889 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11296,503,794 - 96,539,321 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1296,503,794 - 96,536,094 (-)Ensemblpanpan1.1panPan2
USP44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11535,401,486 - 35,454,351 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1535,402,207 - 35,414,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1535,788,165 - 35,841,019 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01536,066,187 - 36,119,066 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1536,066,193 - 36,093,614 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11535,339,057 - 35,391,905 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01535,433,598 - 35,486,456 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01535,696,753 - 35,749,591 (-)NCBIUU_Cfam_GSD_1.0
Usp44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494524,527,677 - 24,572,367 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650711,660,129 - 11,681,366 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650711,663,069 - 11,692,174 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11190,915,107 - 90,950,142 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1190,916,677 - 90,947,456 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037154,220,917 - 154,254,742 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475011,710,218 - 11,724,529 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475011,697,919 - 11,725,421 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP44
888 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 4 2 5 2 2
Below cutoff 5 3 18 3 1

Sequence


RefSeq Acc Id: ENSSSCT00000059735   ⟹   ENSSSCP00000045218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl587,875,851 - 87,889,680 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000101728   ⟹   ENSSSCP00000076025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl587,876,790 - 87,885,031 (+)Ensembl
RefSeq Acc Id: XM_005664245   ⟹   XP_005664302
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1587,864,411 - 87,890,913 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092740   ⟹   XP_020948399
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1587,864,410 - 87,890,913 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020948399   ⟸   XM_021092740
- Peptide Label: isoform X2
- UniProtKB: A0A8D1NZ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664302   ⟸   XM_005664245
- Peptide Label: isoform X1
- UniProtKB: I3LA47 (UniProtKB/TrEMBL),   A0A4X1SJJ1 (UniProtKB/TrEMBL),   A0A287AMI4 (UniProtKB/TrEMBL),   A0A8D1NZ53 (UniProtKB/TrEMBL),   A0A8D1GDB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045218   ⟸   ENSSSCT00000059735
RefSeq Acc Id: ENSSSCP00000076025   ⟸   ENSSSCT00000101728
Protein Domains
UBP-type   USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021307 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033370 UniProtKB/TrEMBL
  ENSSSCG00015068217 UniProtKB/TrEMBL
  ENSSSCG00025046609 UniProtKB/TrEMBL
  ENSSSCG00030056156 UniProtKB/TrEMBL
  ENSSSCG00035071558 UniProtKB/TrEMBL
  ENSSSCG00040054545 UniProtKB/TrEMBL
  ENSSSCG00045000898 UniProtKB/TrEMBL
  ENSSSCG00050078458 UniProtKB/TrEMBL
  ENSSSCG00055019987 UniProtKB/TrEMBL
  ENSSSCG00060052220 UniProtKB/TrEMBL
  ENSSSCG00065067358 UniProtKB/TrEMBL
  ENSSSCG00070001688 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059735 ENTREZGENE
  ENSSSCT00000059735.3 UniProtKB/TrEMBL
  ENSSSCT00000101728.1 UniProtKB/TrEMBL
  ENSSSCT00005053313.1 UniProtKB/TrEMBL
  ENSSSCT00015091492.1 UniProtKB/TrEMBL
  ENSSSCT00025063341.1 UniProtKB/TrEMBL
  ENSSSCT00030078237.1 UniProtKB/TrEMBL
  ENSSSCT00035096762.1 UniProtKB/TrEMBL
  ENSSSCT00040073890.1 UniProtKB/TrEMBL
  ENSSSCT00045001303.1 UniProtKB/TrEMBL
  ENSSSCT00050108102.1 UniProtKB/TrEMBL
  ENSSSCT00055039171.1 UniProtKB/TrEMBL
  ENSSSCT00060071071.1 UniProtKB/TrEMBL
  ENSSSCT00065092462.1 UniProtKB/TrEMBL
  ENSSSCT00070003149.1 UniProtKB/TrEMBL
  ENSSSCT00070003152.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_UBP UniProtKB/TrEMBL
KEGG Report ssc:100516911 UniProtKB/TrEMBL
NCBI Gene USP44 ENTREZGENE
PANTHER BRCA1-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  BRCA1-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 44 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  zf-UBP UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
  ZF_UBP UniProtKB/TrEMBL
SMART ZnF_UBP UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A287AMI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJJ1 ENTREZGENE
  A0A8D1GDB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NZ53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F9S2_PIG UniProtKB/TrEMBL
  E7BK34_PIG UniProtKB/TrEMBL
  I3LA47 ENTREZGENE
UniProt Secondary A0A4X1SJJ1 UniProtKB/TrEMBL
  I3LA47 UniProtKB/TrEMBL
VGNC ID VGNC:94766 ENTREZGENE