CASS4 (Cas scaffold protein family member 4) - Rat Genome Database

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Gene: CASS4 (Cas scaffold protein family member 4) Sus scrofa
Analyze
Symbol: CASS4
Name: Cas scaffold protein family member 4
RGD ID: 14218558
Description: ENCODES a protein that exhibits protein tyrosine kinase binding (inferred); INVOLVED IN positive regulation of cell migration (ortholog); positive regulation of substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); FOUND IN focal adhesion (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C17H20orf32; C20orf32; cas scaffolding protein family member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1756,991,161 - 57,030,581 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11756,990,774 - 57,032,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21764,102,339 - 64,142,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
anchoring junction  (IEA)
cytoplasm  (IBA,IEA)
cytoskeleton  (IEA)
focal adhesion  (IEA,ISS)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CASS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1756,991,161 - 57,030,581 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11756,990,774 - 57,032,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21764,102,339 - 64,142,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CASS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382056,412,036 - 56,460,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2056,412,112 - 56,460,387 (+)EnsemblGRCh38hg38GRCh38
GRCh372054,987,092 - 55,035,438 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362054,420,771 - 54,467,243 (+)NCBINCBI36Build 36hg18NCBI36
Build 342054,420,770 - 54,467,243NCBI
Celera2051,727,599 - 51,774,824 (+)NCBICelera
Cytogenetic Map20q13.31NCBI
HuRef2051,772,068 - 51,819,214 (+)NCBIHuRef
CHM1_12054,888,283 - 54,935,521 (+)NCBICHM1_1
T2T-CHM13v2.02058,189,527 - 58,237,872 (+)NCBIT2T-CHM13v2.0
Cass4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392172,234,998 - 172,275,672 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2172,235,714 - 172,275,677 (+)EnsemblGRCm39 Ensembl
GRCm382172,393,644 - 172,433,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2172,393,794 - 172,433,757 (+)EnsemblGRCm38mm10GRCm38
MGSCv372172,219,294 - 172,258,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362172,084,999 - 172,120,759 (+)NCBIMGSCv36mm8
Celera2178,354,514 - 178,390,720 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map294.85NCBI
Cass4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83181,580,954 - 181,620,945 (+)NCBIGRCr8
mRatBN7.23161,162,520 - 161,202,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3161,163,436 - 161,202,186 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3164,973,348 - 165,011,257 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03173,472,367 - 173,510,279 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,214,183 - 171,252,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03170,398,496 - 170,438,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3170,399,302 - 170,438,993 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03176,474,869 - 176,513,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43163,305,719 - 163,343,236 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13163,192,753 - 163,249,272 (+)NCBI
Celera3160,363,902 - 160,401,246 (+)NCBICelera
Cytogenetic Map3q42NCBI
Cass4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554452,771,586 - 2,809,952 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554452,771,130 - 2,809,815 (-)NCBIChiLan1.0ChiLan1.0
CASS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22162,157,220 - 62,207,963 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12062,150,338 - 62,201,081 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02052,749,725 - 52,799,167 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12054,037,046 - 54,084,867 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2054,037,046 - 54,084,867 (+)Ensemblpanpan1.1panPan2
CASS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12441,621,380 - 41,657,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2441,622,430 - 41,657,028 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2440,869,541 - 40,905,385 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02442,332,772 - 42,368,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2442,332,007 - 42,420,599 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12441,572,557 - 41,608,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02441,711,613 - 41,747,445 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02442,369,588 - 42,405,636 (+)NCBIUU_Cfam_GSD_1.0
Cass4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640183,725,315 - 183,758,787 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936875341,617 - 359,808 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936875344,008 - 359,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASS4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.127,663,180 - 7,710,687 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl27,661,522 - 7,710,305 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605055,735,651 - 55,784,890 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cass4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479071,144 - 112,829 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479067,895 - 112,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CASS4
1571 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 5 2 1 3
Below cutoff 3 1 3 1 18 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000008204   ⟹   ENSSSCP00000007986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1756,991,213 - 57,030,581 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048447   ⟹   ENSSSCP00000042986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1756,991,351 - 57,034,470 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063819   ⟹   ENSSSCP00000047723
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1756,991,347 - 57,030,669 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088123   ⟹   ENSSSCP00000062821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1756,991,161 - 57,030,552 (+)Ensembl
RefSeq Acc Id: NM_001110431   ⟹   NP_001103901
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11756,991,213 - 57,030,581 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985477   ⟹   XP_013840931
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11756,990,774 - 57,032,306 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013840931   ⟸   XM_013985477
- Peptide Label: isoform X1
- UniProtKB: A0A8D0V232 (UniProtKB/TrEMBL),   A0A4X1UQ43 (UniProtKB/TrEMBL),   A0A8D1VK18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103901   ⟸   NM_001110431
- UniProtKB: A5GFW4 (UniProtKB/Swiss-Prot),   A5GFW5 (UniProtKB/Swiss-Prot),   A0A2C9F374 (UniProtKB/TrEMBL),   A0A8D0THN0 (UniProtKB/TrEMBL),   A0A8D1YXW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062821   ⟸   ENSSSCT00000088123
RefSeq Acc Id: ENSSSCP00000042986   ⟸   ENSSSCT00000048447
RefSeq Acc Id: ENSSSCP00000047723   ⟸   ENSSSCT00000063819
RefSeq Acc Id: ENSSSCP00000007986   ⟸   ENSSSCT00000008204
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007495 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005001070 UniProtKB/TrEMBL
  ENSSSCG00015072251 UniProtKB/TrEMBL
  ENSSSCG00025075922 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030062270 UniProtKB/TrEMBL
  ENSSSCG00035060393 UniProtKB/TrEMBL
  ENSSSCG00040008035 UniProtKB/TrEMBL
  ENSSSCG00045019865 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050043342 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055009608 UniProtKB/TrEMBL
  ENSSSCG00060042989 UniProtKB/TrEMBL
  ENSSSCG00065043728 UniProtKB/TrEMBL
  ENSSSCG00070018591 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008204 ENTREZGENE
  ENSSSCT00000008204.3 UniProtKB/TrEMBL
  ENSSSCT00000088123.1 UniProtKB/Swiss-Prot
  ENSSSCT00005001452.1 UniProtKB/TrEMBL
  ENSSSCT00005001459.1 UniProtKB/TrEMBL
  ENSSSCT00005001477.1 UniProtKB/TrEMBL
  ENSSSCT00005001489.1 UniProtKB/TrEMBL
  ENSSSCT00015096941.1 UniProtKB/TrEMBL
  ENSSSCT00015097007.1 UniProtKB/TrEMBL
  ENSSSCT00015097105.1 UniProtKB/TrEMBL
  ENSSSCT00015097240.1 UniProtKB/TrEMBL
  ENSSSCT00015097379.1 UniProtKB/TrEMBL
  ENSSSCT00025104886.1 UniProtKB/TrEMBL
  ENSSSCT00025104907.1 UniProtKB/TrEMBL
  ENSSSCT00025104925.1 UniProtKB/TrEMBL
  ENSSSCT00025104952.1 UniProtKB/Swiss-Prot
  ENSSSCT00030087087.1 UniProtKB/TrEMBL
  ENSSSCT00030087110.1 UniProtKB/TrEMBL
  ENSSSCT00035081027.1 UniProtKB/TrEMBL
  ENSSSCT00035081037.1 UniProtKB/TrEMBL
  ENSSSCT00035081040.1 UniProtKB/TrEMBL
  ENSSSCT00040010539.1 UniProtKB/TrEMBL
  ENSSSCT00040010547.1 UniProtKB/TrEMBL
  ENSSSCT00040010555.1 UniProtKB/TrEMBL
  ENSSSCT00045033828.1 UniProtKB/TrEMBL
  ENSSSCT00045033884.1 UniProtKB/TrEMBL
  ENSSSCT00045033914.1 UniProtKB/Swiss-Prot
  ENSSSCT00050058972.1 UniProtKB/TrEMBL
  ENSSSCT00050058986.1 UniProtKB/TrEMBL
  ENSSSCT00050058992.1 UniProtKB/Swiss-Prot
  ENSSSCT00055018772.1 UniProtKB/TrEMBL
  ENSSSCT00055018805.1 UniProtKB/TrEMBL
  ENSSSCT00055018831.1 UniProtKB/TrEMBL
  ENSSSCT00060058286.1 UniProtKB/TrEMBL
  ENSSSCT00060058296.1 UniProtKB/TrEMBL
  ENSSSCT00060058303.1 UniProtKB/TrEMBL
  ENSSSCT00065059827.1 UniProtKB/TrEMBL
  ENSSSCT00065059831.1 UniProtKB/TrEMBL
  ENSSSCT00070036663.1 UniProtKB/TrEMBL
  ENSSSCT00070036671.1 UniProtKB/Swiss-Prot
  ENSSSCT00070036674.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.120.830 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Alpha-catenin/vinculin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAS_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAS_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASS4_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serine_rich_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serine_rich_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100126293 UniProtKB/Swiss-Prot
NCBI Gene CASS4 ENTREZGENE
PANTHER PTHR10654 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10654:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAS_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serine_rich UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2C9F374 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UQ43 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HL55_PIG UniProtKB/TrEMBL
  A0A8D0HMH7_PIG UniProtKB/TrEMBL
  A0A8D0HVH3_PIG UniProtKB/TrEMBL
  A0A8D0HWM8_PIG UniProtKB/TrEMBL
  A0A8D0PVU1_PIG UniProtKB/TrEMBL
  A0A8D0PWG7_PIG UniProtKB/TrEMBL
  A0A8D0PXV9_PIG UniProtKB/TrEMBL
  A0A8D0Q0U6_PIG UniProtKB/TrEMBL
  A0A8D0THM1_PIG UniProtKB/TrEMBL
  A0A8D0THN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V232 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XRV2_PIG UniProtKB/TrEMBL
  A0A8D1APV2_PIG UniProtKB/TrEMBL
  A0A8D1CFA7_PIG UniProtKB/TrEMBL
  A0A8D1DAR0_PIG UniProtKB/TrEMBL
  A0A8D1MM83_PIG UniProtKB/TrEMBL
  A0A8D1Q3H0_PIG UniProtKB/TrEMBL
  A0A8D1TZ42_PIG UniProtKB/TrEMBL
  A0A8D1VK18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YXW0 ENTREZGENE, UniProtKB/TrEMBL
  A5GFW4 ENTREZGENE
  A5GFW5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A5GFW4 UniProtKB/Swiss-Prot
VGNC ID VGNC:103912 ENTREZGENE